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Describe the bug
When gandlf_process is run (with normalize and crop_external_zero_plane as preprocessing parameters), the process runs fine for a validation csv with ~180 subjects, but fails with OOM error for training csv with ~800 subjects using the BraTS data.
To Reproduce
Construct a CSV of ~180 BraTS subjects, and another with ~720 subjects (copy-pasting the same 180 cases with different subject IDs should reproduce the error).
Construct a config (model and training parameters don't matter) but have this key for preprocessing:
Describe the bug
When
gandlf_process
is run (withnormalize
andcrop_external_zero_plane
as preprocessing parameters), the process runs fine for a validation csv with ~180 subjects, but fails with OOM error for training csv with ~800 subjects using the BraTS data.To Reproduce
gandlf_preprocess
script for both these cases.Expected behavior
It should run for both.
Screenshots
N.A.
GaNDLF Version
0.0.18-dev
Desktop (please complete the following information):
N.A.
Additional context
Memory profiler (thanks @hasan7n): https://pypi.org/project/memory-profiler/
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