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Mistake in basic_data_output tutorial example output #150

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axiezai opened this issue Jan 29, 2020 · 0 comments
Open

Mistake in basic_data_output tutorial example output #150

axiezai opened this issue Jan 29, 2020 · 0 comments

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@axiezai
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axiezai commented Jan 29, 2020

Hi Miykael,

I was going over the basic_data_output tutorial, and it seems like there's a mistake in the outputs of the notebook cells in the section "How to use Datasink".

The 3 outputs of the cells with !tree are identical, when you first clean up the datasink, restructure the folders, and when you use substitutions to replace the file names.

they are always:


! tree /output/working_dir/preprocWF_output

/output/working_dir/preprocWF_output
├── in_file
│   ├── sub-01_ses-test_task-fingerfootlips_bold_mcf_smooth.nii.gz
│   └── sub-01_smooth.nii.gz
├── mean_img
│   ├── sub-01_mean.nii.gz
│   └── sub-01_ses-test_task-fingerfootlips_bold_mcf.nii.gz_mean_reg.nii.gz
├── par_file
│   ├── sub-01.par
│   └── sub-01_ses-test_task-fingerfootlips_bold_mcf.nii.gz.par
└── preproc
    ├── sub-01_mean.nii.gz
    ├── sub-01.par
    ├── sub-01_ses-test_task-fingerfootlips_bold_mcf.nii.gz_mean_reg.nii.gz
    ├── sub-01_ses-test_task-fingerfootlips_bold_mcf.nii.gz.par
    ├── sub-01_ses-test_task-fingerfootlips_bold_mcf_smooth.nii.gz
    └── sub-01_smooth.nii.gz
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