Problem with hotplot

[XueWang2019]

Dear developers,

I followed the document to play with the microbiome package:
https://bioconductor.statistik.tu-dortmund.de/packages/3.6/bioc/vignettes/microbiome/inst/doc/vignette.html

Everything goes well until "8 Bistability and tipping elements"

hotplot(pseq, "Dialister", tipping.point = 0.0004)

The result is like below:

The warning message is as following:
Warning messages:
1: In transform(x, "log10") :
OTU table contains zeroes. Using log10(1 + x) transform.
2: guides(<scale> = FALSE) is deprecated. Please use guides(<scale> = "none") instead.
3: Removed 785 rows containing non-finite values (stat_bin).
4: Removed 2 rows containing missing values (geom_bar).
5: Removed 1151 rows containing missing values (geom_vline).

Then I updated ggvenn package according to https://githubmemory.com/repo/yanlinlin82/ggvenn/issues/20

But the problem persisted. May I ask for your help with it? Thanks in advance.

[antagomir]

This visualization has been constantly problematic. We will need a more robust solution than what is currently available. Implementing such may take some time i.e. no quick fix is possible unfortunately. I leave this open, and PRs also welcome.