/
countBases.cc
66 lines (55 loc) · 3.25 KB
/
countBases.cc
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
/*OPPGAVE 4
Deoksyribonukleinsyre (DNA) er den viktigste kjemiske bestanddelen i arvematerialet til levende organismer.
DNA består av deoksyribose, en fosfatgruppe og fire nitrogenbaser. DNA er kodet med fire utbyttbare "byggestener",
kalt "baser", og kan forkortes A, C, G eller T, etter deres kjemiske betegnelser: Adenin, Cytosin, Guanin og Tymin.
I denne oppgaven er vi ute etter antall ganger 'A', 'C', 'G', og 'T' oppstår i en Streng.
Eksempel: ATGCTTCAGAAAGGTCTTACG
Gir følgende svar: A6, C4, G5, T6
Hva gir følgende DNA streng?
TAACGAGTCTGCCACTAGATAGCCCGCGCTATTAATGGGATGTTCTAGGTCTTCACCTCGACCTATACAAGACGAGAAT
TCTGGTTCAGCCGGTCCGGGGTCGGGAGTTTGGCTTCATAACACAATTGCAGGCGTCAGAGGCCATACCTTAAACCCAT
CATACGACCGGTACGAAAATCCATGTCACAGACTAATGATCCCTGCTAAGAGATCGTAGCAACCGTTCTGGATCCAAGC
AGCTAATAAGTTAGCAAGCTGGTGTGTTTTTGATATTTGCAGTGGCAAACTGTTGCCTGGGTCGGTCCGATGGTCCTCA
TCGGACGCTGATGACGGACTTTGCACGGTCGCAAGTCGCTGATAGAAGGTGACTCTCGTGCACGATTTAGACCGGCAGT
GCTGCGTGAAGGGGGCTCCCTTATCTGATATGCGCAGACTATTTCGGCGTGGAATGCACATGTTCCCCGACCACTTCAA
CCCTCATGTTGAGGACTTCCTGCCATAACAACAGGGTAACTTAACTCAGGATGTCTTAAAAAAATAGGCTTCTCATGTG
CTCACATTTGGGACCGTATGTGCTAAACGGTGTACTATACGCGGTGGAATTTGGAATGGCAAACTTAACAGCAGGTCTA
ACCGTAGAAGACGTTACGAGTAAGTGTCAAGTCAGCATTGGCGGATCACGGCGTCGCTATGCCGTCAAGCTCTTTTGCG
GATATGATCTAAATCAGATTACGAGCGACGCCTGTTTCTAAAATGACCAATGGTACGCAACACGCTGGTAGGATCTGAG
CGAGCAAAGCATAAATAGACCCATCGTGTCGCCTGTAAATTGCAAGAGTACCAAGAACCCCGCAATTACGTTGGGTTCG
CTATAGTTGAAAGTTACCGATAAACTACCTTTCGCGACCCGTTTTATAACATAACTAGCATTATTACTCAAGGTGCTCT
GATTCCCAGAATACCCAAGAACTAGCGCGTTTTTATTTCTTTGGGGAGGTCTTGTCATGATGTTCATACTTGTCGCCTA
GGTTTGCCGACTTGTCCTTCTCTTACACTATTCCGAAATCGCAGTTGCACCACGATCGATGAGCATGGTAGTTACTTAA
ATATTCAAGAGTCCTGGTCCTCGAAATGGCATATGCTTGCAGGTGCCCCCGATCAGATAGAAGACCGCGGCCGAGGAGG
TAGTCCGGTACTGTGCGTTTGGTGCCTTTGACTCTTTACGCACTACTGGACCGGCCTTCGAGGTCTAAGGCTACGTCCT
TTAACGCTTTTACTATACAATAGAAGGTGTTCTACACACTGCGTGTCGCTGGATTGGCCTTCGACACGCCTTAGCGGCA
TGTATCAAGCTATCAGGGAGCCCATTGTGGGCGGTTACTCGTCGTTTGCACAACATCAGACCATTCACTATTAAGCTCA
TCCCCGAAGAAGGCACCCTACCGTTGTAAGTGCGACTTTGGAACCTCTCGGTAATGCCGGTTGCGGCACTTTCAACGTA
CATTCCGACCTAGTGCAGAAGAATGGATAGCGAGCTGTTTTTCGAGCTCTACCTAATCGGCTCGAATCTACTCGACGTG
TCGAGCGTCCTGTCGCATGGCTCGAAGCGGTATCGAGTCAGTCCCCCAGGGGCGCCGACACGTAGTGAGGTGAAAACAT
CGACATGTGCTTTTGATGTATATGGCTGAGCTTCAATGCGTGGCTAAAGTGGTCAATCCACTCAGGGCATGGATACTCG
GCTCAACATAGTAAATTGTCTCCGCGTCCGATAGGCGGGGGTCAATCCGCCGCACTGGTGGGTCACCCGTGATGCTAGG
TCTATAGCAGGGCCCCGACCGTAAACTTCAAGCTTTCCCGGTTGCTGTTGTTTTTTGAGCACAGGGAAACGAGCAGTAT
TGAATCTGAAGGGGGATAGGCGTTTAATTATTCAGAAGTAGTGCGAAGGGCTCCATATGACACTAGTCGTAGTAAGCAC
ATGCTGGAGGTCTGGACTTCCTTCG
Svaret skal oppgis i en kommaseparert liste i alfabetisk rekkefølge mellom bokstavene (dvs A, C, G, T).
Eksempel: A20, C2, G90, T22*/
#include <fstream>
#include <algorithm>
#include <sstream>
#include "countBases.h"
using namespace std;
string countBases() {
ifstream file("resources/DNA_sequence.txt");
string line;
int numA = 0, numC = 0, numG = 0, numT = 0;
while (file >> line) {
numA += count(line.begin(), line.end(), 'A');
numC += count(line.begin(), line.end(), 'C');
numG += count(line.begin(), line.end(), 'G');
numT += count(line.begin(), line.end(), 'T');
}
ostringstream ss;
ss << "A" << numA << ", C" << numC << ", G" << numG << ", T" << numT;
return ss.str();
}