Metabolomics Workbench Jupyter Notebook Examples

https://www.metabolomicsworkbench.org

Instructions for using the Metabolomics Workbench Jupyter Notebook Examples on the Metabolomics Workbench Cloud

• Data normalization and averaging
  • Plot distributions of metabolites
  • Normalize data
  • Plot relative log abundance
• Clustering and correlation
  • Perform clustered heatmap analysis
• Univariate analysis
  • Perform volcano plot analysis
• Multivariate analysis
  • Perform principal component analysis
  • Perform linear discriminant analysis
  • Perform partial least squares discriminant analysis
• Classification and feature analysis
  • Perform random forest analysis
• Retrieving data using MW REST API
  • Retrieve study data
  • Retrieve compound data
  • Retrieve named metabolites data
  • Retrieve RefMet data
  • Retrieve gene data
  • Retrieve protein data
  • Calculate exact mass for lipid species
  • Perform m/z search

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