New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

mRNA-seq: sambamba markdup fails because "too many open files" #1010

Open

caballero opened this issue Apr 15, 2024 · 0 comments

caballero commented Apr 15, 2024

Running the mRNA-seq pipeline is failing because it open too many files in filesystem, user ulimit is set as 1024 by default

Problem could be more than one process is running in the same node

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment