NeuroSnippets

This is the repository containing all the code presented and explained in the blog with the same name, together with all the requirements to run it. The code is organised by topic.

BrainViz

• Making a glass brain
• A dashboard to quickly check MRI data
• Quick visual skull-stripping with FSL BET and Streamlit
• Interactive brain networks
• A minimal Streamlit-based viewer for DICOM data

DataViz

• Interactive treemaps for interactive reviews
• One brain, one dashboard, four frameworks

Tips and Tricks

• Running MRtrix3 in Colab
• A voice assistant to monitor a target application

Workflows

• FSL-FIX in a box
• Diffusion MRI preprocessing through papermill
• A recipe for bundle-wise, myelin-weighted connectomes