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matt-sd-watson/README.md

Hi there 👋

I am a programmer/developer with the LTRI at Mount Sinai (Toronto, Canada) working jointly with the Campbell and Jackson groups with experience in:

🐍 programming and software development
📌 Data science/analysis
♋ cancer genomics
🐛 public health pathogen analysis
💻 single cell multi-omics


🔬 By day: dev, pipeline engineering, coding, statistics, CI/CD
🎓 By night: pursuing an online MSc. in Data Science, University of Texas at Austin
⏰ Off the clock: I can be found in a 🛶 or seeking a new international adventure ✈️. Almost always looking for a good 🍺.




Check out some of my software packages!

🏎️ FASTAfurious
🍄 spora
🔀 nf-processes
📊 cytomarker


Also check out some of the public Github software that I have contributed to!

🦔 pangolin
🌲 ggtree
🔎 civet/civet3
⚡ snipit
📶 infercnv

Pinned

  1. YuLab-SMU/ggtree YuLab-SMU/ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 797 169

  2. cov-lineages/pangolin cov-lineages/pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    Python 412 108

  3. GaitiLab/nf-processes GaitiLab/nf-processes Public

    modules for processing and analyzing single cell data using Nextflow

    Nextflow 2 1

  4. spora spora Public

    🍄 spora: Streamlined Phylogenomic Outbreak Report Analysis

    Python 1

  5. FASTAfurious FASTAfurious Public

    🏎️ Bundled utilities for manipulation and integration of FASTA files

    Python 2

  6. beernanza beernanza Public

    memory match tile app implemented using a Swing-based GUI and object oriented concepts

    Java 1