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pplacer 1.1.alpha19 or 1.1.alpha17 - BioConda - guppy - RaXML 8 #360
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Hello @AjitPS -- All pplacer releases have guppy in them. We stopped directly supporting RAxML output in pplacer ages ago. The modern way is to use a reference package made with http://fhcrc.github.io/taxtastic/. I don't know how the Galaxy wrapper works, but taxtastic does support RAxML 8 as far as I know. Please close if this answers your questions. Thanks! |
Thanks @matsen, is Also, we had developed a Galaxy wrapper for |
I don't think so, but it's here: https://pypi.python.org/pypi/taxtastic There may be a problem with the conda recipe, I'm not sure. alpha17 is nearly the same as alpha19. |
Thanks @matsen , does the |
Hi @matsen , does the alpha17 conda recipe (https://bioconda.github.io/recipes/pplacer/README.html) work for you? |
It does install, and runs
|
Hi @matsen,
This is a question around
pplacer
inbioconda
, to be used inGalaxy
.We have an older tool wrapper developed for Galaxy which uses
pplacer 1.1.alpha11
withRaXML 7.3
.We also have
RaXML 8.0
installed in Galaxy via conda and were thinking of upgrading to the latest pplacer (1.1.alpha19
). However,bioconda
only haspplacer 1.1.alpha17
:https://github.com/bioconda/bioconda-recipes/blob/master/recipes/pplacer/meta.yaml
I tried installing that via bioconda but the install & v.env creation failed.
Before I work on this more, I wanted to confirm that 1.1.alpha17 release supports RaXML 8 and also if it has
guppy
in it?Thanks.
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