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Unable to install bibliomatrix in RStudio 2023.09.1 Build 494 #397

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prashantnag93 opened this issue Nov 4, 2023 · 0 comments
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@prashantnag93
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Hi there,
I am Unale to install bibliomatrix in RStudio 2023.09.1 Build 494.

RStudio Version: 2023.09.1 Build 494.
OS: Windows 11
R.Version:
platform x86_64-w64-mingw32
arch x86_64
os mingw32
crt ucrt
system x86_64, mingw32
status
major 4
minor 3.2
year 2023
month 10
day 31
svn rev 85441
language R
version.string R version 4.3.2 (2023-10-31 ucrt)
nickname Eye Holes

When I tried to install through remotes::install_github("massimoaria/bibliometrix") it gives me following error:
`Installing 'XML' ...

Installing package into 'C:/Users/prash/AppData/Local/R/win-library/4.3'
(as 'lib' is unspecified)

There is a binary version available but the source version is later:
binary source needs_compilation
XML 3.99-0.14 3.99-0.15 TRUE

installing the source package 'XML'

trying URL 'https://cran.rstudio.com/src/contrib/XML_3.99-0.15.tar.gz'
Content type 'application/x-gzip' length 970304 bytes (947 KB)

downloaded 947 KB

  • installing source package 'XML' ...
    ** package 'XML' successfully unpacked and MD5 sums checked
    ** using staged installation
    ** libs
    Warning: this package has a non-empty 'configure.win' file,
    so building only the main architecture

gcc -I"C:/PROGRA1/R/R-4.3.2/include" -DNDEBUG -Ic:/rtools43/x86_64-w64-mingw32.static.posix/include/libxml2 -I/include -D_R_=1 -DUSE_R=1 -DUSE_XML_VERSION_H=1 -DLIBXML -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DUMP_WITH_ENCODING=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DLIBXML2=1 -DHAVE_XML_HAS_FEATURE -DLIBXML_STATIC -DNO_XML_HASH_SCANNER_RETURN=1 -I"c:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DocParse.c -o DocParse.o
using C compiler: 'gcc.exe (Rev10, Built by MSYS2 project) 12.2.0'
In file included from DocParse.c:10:
DocParse.h:18:10: fatal error: libxml/parser.h: No such file or directory
18 | #include <libxml/parser.h>
| ^~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [C:/PROGRA
1/R/R-4.3.2/etc/x64/Makeconf:265: DocParse.o] Error 1
ERROR: compilation failed for package 'XML'

  • removing 'C:/Users/prash/AppData/Local/R/win-library/4.3/XML'

The downloaded source packages are in
'C:\Users\prash\AppData\Local\Temp\RtmpyAmydG\downloaded_packages'

✔ Package 'XML' successfully installed.
Warning message:
In utils::install.packages("XML", repos = "https://cran.rstudio.com/") :
installation of package 'XML' had non-zero exit status`

In my system I have xml2 package.
Please help me out here.

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