Error message when running ragtag_scaffold.py

[Surbhigrewal]

Hi,

Im running scaffold with ragtag but I am getting the following error

Traceback (most recent call last):
File "/gpfs01/home/sbzsm11/miniconda3/envs/ragtag/bin/ragtag_scaffold.py", line 577, in
main()
File "/gpfs01/home/sbzsm11/miniconda3/envs/ragtag/bin/ragtag_scaffold.py", line 420, in main
al.run_aligner()
File "/gpfs01/home/sbzsm11/miniconda3/envs/ragtag/lib/python3.5/site-packages/ragtag_utilities/Aligner.py", line 128, in run_aligner
run_oe(self.compile_command(), self.out_file, self.out_log)
File "/gpfs01/home/sbzsm11/miniconda3/envs/ragtag/lib/python3.5/site-packages/ragtag_utilities/utilities.py", line 73, in run_oe
raise RuntimeError("Failed : %s > %s 2> %s" % (" ".join(cmd), out, err))
RuntimeError: Failed : minimap2 -x asm5 -t 32 ...

Its a very similar message to issue 17 but that was resolved in a version update. However, I'm experiencing this in version 2.1.0. Any help would be appreciated.