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I've tried downgrading scipy to various versions but still unable to make it work.
My output:
UMAP(random_state=42,` verbose=True)
Construct fuzzy simplicial set
Thu Dec 14 12:55:37 2023 Finding Nearest Neighbors
Thu Dec 14 12:55:37 2023 Building RP forest with 25 trees
Thu Dec 14 12:55:57 2023 NN descent for 17 iterations
0 / 17
1 / 17
2 / 17
3 / 17
4 / 17
5 / 17
Thu Dec 14 12:56:49 2023 Finished Nearest Neighbor Search
Traceback (most recent call last):
File "***\Umap_deepseqprot.py", line 138, in <module>
results = Main(files)
File "***\Umap_deepseqprot.py", line 105, in Main
mapper = UMAP(random_state=42,verbose = True).fit(matrix)
File "***\venv\lib\site-packages\umap\umap_.py", line 1452, in fit
self._search_graph.transpose()
File "***\venv\lib\site-packages\scipy\sparse\lil.py", line 437, in transpose
return self.tocsr(copy=copy).transpose(axes=axes, copy=False).tolil(copy=False)
File "***\venv\lib\site-packages\scipy\sparse\lil.py", line 468, in tocsr
_csparsetools.lil_get_lengths(self.rows, lengths)
File "_csparsetools.pyx", line 109, in scipy.sparse._csparsetools.lil_get_lengths
ValueError: Buffer has wrong number of dimensions (expected 1, got 2)
Process finished with exit code 1
```
The text was updated successfully, but these errors were encountered:
Azzarekt
changed the title
Error Running UMAP
scipy.sparse._csparsetools.lil_get_lengths Error Running UMAP
Dec 14, 2023
Chunk of code:
``
``
Even with a one liner it doesn't work
I've tried downgrading scipy to various versions but still unable to make it work.
My output:
The text was updated successfully, but these errors were encountered: