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Segmentation fault with ksw_exts2_sse #15

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jmaricb opened this issue Nov 14, 2019 · 0 comments
Open

Segmentation fault with ksw_exts2_sse #15

jmaricb opened this issue Nov 14, 2019 · 0 comments

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@jmaricb
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jmaricb commented Nov 14, 2019

Hi I have been using ksw_exts2_sse with following parameters:
int noncan = 9;
q = 4;
e = 2;
q2 = 32;
zdrop = 200;
flag = 1600;

and I get segmentation fault for big qlen and/or tlen. For example if tlen is greater than 80K or 90K or when qlen is greater than 40K or 50K of bases.
Does ksw2 have any limitation for qlen or tlen?

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