{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":74318002,"defaultBranch":"master","name":"lcdb-wf","ownerLogin":"lcdb","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2016-11-21T02:17:04.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/7584817?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1717695168.0","currentOid":""},"activityList":{"items":[{"before":"781d5a56913302d806d0d4f69cc79bf3e0bc26a8","after":"d024d9f7237345e8a2cb409a6c446db078fa72e2","ref":"refs/heads/LRT","pushedAt":"2024-06-11T22:42:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"menoldmt","name":null,"path":"/menoldmt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129203894?s=80&v=4"},"commit":{"message":"removed comments","shortMessageHtmlLink":"removed comments"}},{"before":"0bebf30c3d8e23ef2fb238935ed3cf1d03dc8e94","after":"781d5a56913302d806d0d4f69cc79bf3e0bc26a8","ref":"refs/heads/LRT","pushedAt":"2024-06-11T22:32:36.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"menoldmt","name":null,"path":"/menoldmt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129203894?s=80&v=4"},"commit":{"message":"More comment changes","shortMessageHtmlLink":"More comment changes"}},{"before":"f912b1a58085eaa3253bebd150cef4f8dfaca2f6","after":"0bebf30c3d8e23ef2fb238935ed3cf1d03dc8e94","ref":"refs/heads/LRT","pushedAt":"2024-06-11T22:26:47.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"menoldmt","name":null,"path":"/menoldmt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129203894?s=80&v=4"},"commit":{"message":":s/mcols/S4Vectors::mcols/","shortMessageHtmlLink":":s/mcols/S4Vectors::mcols/"}},{"before":"12a7478de80d2f4e0d6c3b434603bb68210085b3","after":"f912b1a58085eaa3253bebd150cef4f8dfaca2f6","ref":"refs/heads/LRT","pushedAt":"2024-06-11T22:04:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"menoldmt","name":null,"path":"/menoldmt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129203894?s=80&v=4"},"commit":{"message":"removed unnecessary code","shortMessageHtmlLink":"removed unnecessary code"}},{"before":"f868b0386324b617986d67fd74723547efe6df65","after":"12a7478de80d2f4e0d6c3b434603bb68210085b3","ref":"refs/heads/LRT","pushedAt":"2024-06-11T21:53:16.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"menoldmt","name":null,"path":"/menoldmt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129203894?s=80&v=4"},"commit":{"message":"removed capture_output wrapper, wasnt working with Rscript -e devtools","shortMessageHtmlLink":"removed capture_output wrapper, wasnt working with Rscript -e devtools"}},{"before":"75e62de7f7d250d0a7498f0c4dea84a948888a82","after":null,"ref":"refs/heads/fix-r-tests","pushedAt":"2024-06-06T17:32:48.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"daler","name":"Ryan Dale","path":"/daler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115406?s=80&v=4"}},{"before":"76b6f03b19c0630b4645ba657879323927dbfbbd","after":"f868b0386324b617986d67fd74723547efe6df65","ref":"refs/heads/LRT","pushedAt":"2024-06-06T17:32:44.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"daler","name":"Ryan Dale","path":"/daler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115406?s=80&v=4"},"commit":{"message":"Merge pull request #403 from lcdb/fix-r-tests\n\nFix R tests","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2338702463\" data-permission-text=\"Title is private\" data-url=\"https://github.com/lcdb/lcdb-wf/issues/403\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/lcdb/lcdb-wf/pull/403/hovercard\" href=\"https://github.com/lcdb/lcdb-wf/pull/403\">#403</a> from lcdb/fix-r-tests"}},{"before":"b0fe18a276b0bb1f7209f3c818a3ed9908cf90dd","after":"75e62de7f7d250d0a7498f0c4dea84a948888a82","ref":"refs/heads/fix-r-tests","pushedAt":"2024-06-06T16:52:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"daler","name":"Ryan Dale","path":"/daler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115406?s=80&v=4"},"commit":{"message":"clean up printed output during tests","shortMessageHtmlLink":"clean up printed output during tests"}},{"before":null,"after":"b0fe18a276b0bb1f7209f3c818a3ed9908cf90dd","ref":"refs/heads/fix-r-tests","pushedAt":"2024-06-06T15:24:27.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"daler","name":"Ryan Dale","path":"/daler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115406?s=80&v=4"},"commit":{"message":"make testthat tests exit nonzero upon failure","shortMessageHtmlLink":"make testthat tests exit nonzero upon failure"}},{"before":"e157a8a9bcc6f7f25cb0fc2b2a4cac5e5fbd7837","after":"76b6f03b19c0630b4645ba657879323927dbfbbd","ref":"refs/heads/LRT","pushedAt":"2024-06-04T13:55:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"daler","name":"Ryan Dale","path":"/daler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115406?s=80&v=4"},"commit":{"message":"try fixing r-tests to exit nonzero if failed","shortMessageHtmlLink":"try fixing r-tests to exit nonzero if failed"}},{"before":null,"after":"bee39e04010352c2dca63757f982e22fe213e0e4","ref":"refs/heads/393","pushedAt":"2024-06-03T19:53:02.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"menoldmt","name":null,"path":"/menoldmt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129203894?s=80&v=4"},"commit":{"message":"minor change to error docs","shortMessageHtmlLink":"minor change to error docs"}},{"before":"814f29111a183b0eadf0c2b62fb455e27cf06d41","after":"e157a8a9bcc6f7f25cb0fc2b2a4cac5e5fbd7837","ref":"refs/heads/LRT","pushedAt":"2024-05-31T14:22:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"menoldmt","name":null,"path":"/menoldmt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129203894?s=80&v=4"},"commit":{"message":"explination of LRT all(LFC == 0)","shortMessageHtmlLink":"explination of LRT all(LFC == 0)"}},{"before":"f8ffa7d8159f78f84c58b443279a503904603674","after":"814f29111a183b0eadf0c2b62fb455e27cf06d41","ref":"refs/heads/LRT","pushedAt":"2024-05-30T20:53:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"menoldmt","name":null,"path":"/menoldmt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129203894?s=80&v=4"},"commit":{"message":"un ignored testthat featurecounts.txt","shortMessageHtmlLink":"un ignored testthat featurecounts.txt"}},{"before":"5530bd368542f57e55cad029e882d21225d906aa","after":"f8ffa7d8159f78f84c58b443279a503904603674","ref":"refs/heads/LRT","pushedAt":"2024-05-30T20:45:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"menoldmt","name":null,"path":"/menoldmt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129203894?s=80&v=4"},"commit":{"message":"removed code for testing the tests","shortMessageHtmlLink":"removed code for testing the tests"}},{"before":"de046d381d2ce17d0633f268c7465a94659238b7","after":"5530bd368542f57e55cad029e882d21225d906aa","ref":"refs/heads/LRT","pushedAt":"2024-05-30T20:43:25.000Z","pushType":"push","commitsCount":15,"pusher":{"login":"menoldmt","name":null,"path":"/menoldmt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/129203894?s=80&v=4"},"commit":{"message":"removed library and devtools lcdbwf loadings from tests","shortMessageHtmlLink":"removed library and devtools lcdbwf loadings from tests"}},{"before":"8f4afce5cf5eaad4c874d09c6e1e5041214b9c95","after":null,"ref":"refs/heads/universe","pushedAt":"2024-05-22T01:36:14.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"Mira0507","name":"Mira Sohn","path":"/Mira0507","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57876673?s=80&v=4"}},{"before":"22c2ac1a2bc0bbb16d07da933737efbbdaaf6ede","after":"9bf7098ca6c5d20c5d067e07f8f2410b1c5167aa","ref":"refs/heads/v1.11","pushedAt":"2024-05-22T01:32:17.000Z","pushType":"pr_merge","commitsCount":11,"pusher":{"login":"Mira0507","name":"Mira Sohn","path":"/Mira0507","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57876673?s=80&v=4"},"commit":{"message":"Merge pull request #401 from lcdb/universe\n\nLimit background genes in overrepresentation analysis in functional-enrichment.Rmd","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2303499179\" data-permission-text=\"Title is private\" data-url=\"https://github.com/lcdb/lcdb-wf/issues/401\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/lcdb/lcdb-wf/pull/401/hovercard\" href=\"https://github.com/lcdb/lcdb-wf/pull/401\">#401</a> from lcdb/universe"}},{"before":"b013bfadf0af57e4d57c5452b62492d829c57333","after":"8f4afce5cf5eaad4c874d09c6e1e5041214b9c95","ref":"refs/heads/universe","pushedAt":"2024-05-21T18:04:28.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"Mira0507","name":"Mira Sohn","path":"/Mira0507","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57876673?s=80&v=4"},"commit":{"message":"downstream functional enrichment analysis updated with an error for unmatched list names between universe_list and res_list & indentation changed","shortMessageHtmlLink":"downstream functional enrichment analysis updated with an error for u…"}},{"before":"9165f31099248752f03b1ce2b92e801f496534aa","after":"b013bfadf0af57e4d57c5452b62492d829c57333","ref":"refs/heads/universe","pushedAt":"2024-05-21T03:33:08.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"Mira0507","name":"Mira Sohn","path":"/Mira0507","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57876673?s=80&v=4"},"commit":{"message":"universe_list to limit background genes","shortMessageHtmlLink":"universe_list to limit background genes"}},{"before":"3fd0118477e91d4d526ed47539c6d2677b209119","after":"9165f31099248752f03b1ce2b92e801f496534aa","ref":"refs/heads/universe","pushedAt":"2024-05-19T16:45:10.000Z","pushType":"push","commitsCount":46,"pusher":{"login":"daler","name":"Ryan Dale","path":"/daler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115406?s=80&v=4"},"commit":{"message":"Merge branch 'v1.11' into universe","shortMessageHtmlLink":"Merge branch 'v1.11' into universe"}},{"before":"f30e6ad7544f2c5bb12c4c77540ea98c601b002e","after":"22c2ac1a2bc0bbb16d07da933737efbbdaaf6ede","ref":"refs/heads/v1.11","pushedAt":"2024-05-17T20:01:55.000Z","pushType":"pr_merge","commitsCount":43,"pusher":{"login":"daler","name":"Ryan Dale","path":"/daler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115406?s=80&v=4"},"commit":{"message":"Merge pull request #399 from lcdb/carnation_obj\n\nGenerate RDS object ready for carnation","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2286258934\" data-permission-text=\"Title is private\" data-url=\"https://github.com/lcdb/lcdb-wf/issues/399\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/lcdb/lcdb-wf/pull/399/hovercard\" href=\"https://github.com/lcdb/lcdb-wf/pull/399\">#399</a> from lcdb/carnation_obj"}},{"before":null,"after":"3fd0118477e91d4d526ed47539c6d2677b209119","ref":"refs/heads/universe","pushedAt":"2024-05-17T19:42:29.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Mira0507","name":"Mira Sohn","path":"/Mira0507","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/57876673?s=80&v=4"},"commit":{"message":" argument added to  function to limit background genes","shortMessageHtmlLink":" argument added to function to limit background genes"}},{"before":"afde45fddeaecfc1168f5628beac361c0d67355e","after":"1fdcde8525e0c6cdd9484e23d7a6b0cf3a7ade5b","ref":"refs/heads/carnation_obj","pushedAt":"2024-05-14T14:09:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mitraak","name":null,"path":"/mitraak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16709900?s=80&v=4"},"commit":{"message":"correctly handle 'res' key","shortMessageHtmlLink":"correctly handle 'res' key"}},{"before":"762f1b4aea8f96d72472926e4c102373484b9428","after":"afde45fddeaecfc1168f5628beac361c0d67355e","ref":"refs/heads/carnation_obj","pushedAt":"2024-05-13T20:23:34.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"mitraak","name":null,"path":"/mitraak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16709900?s=80&v=4"},"commit":{"message":"add tests for downstream","shortMessageHtmlLink":"add tests for downstream"}},{"before":"e561fb18e97cd84d97170fb6f2307bb3130dae32","after":"762f1b4aea8f96d72472926e4c102373484b9428","ref":"refs/heads/carnation_obj","pushedAt":"2024-05-10T20:38:46.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"mitraak","name":null,"path":"/mitraak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16709900?s=80&v=4"},"commit":{"message":"fix message - should be 'rld_list'","shortMessageHtmlLink":"fix message - should be 'rld_list'"}},{"before":"f666f3cb62e7aa4950b5eb40dde269977ed419b4","after":"e561fb18e97cd84d97170fb6f2307bb3130dae32","ref":"refs/heads/carnation_obj","pushedAt":"2024-05-10T15:32:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mitraak","name":null,"path":"/mitraak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16709900?s=80&v=4"},"commit":{"message":"switch !is.null to missing to correctly check fr missing args","shortMessageHtmlLink":"switch !is.null to missing to correctly check fr missing args"}},{"before":"569889aadb5fa942ec466a6b19ff2007710882cc","after":"f666f3cb62e7aa4950b5eb40dde269977ed419b4","ref":"refs/heads/carnation_obj","pushedAt":"2024-05-10T01:25:56.000Z","pushType":"push","commitsCount":19,"pusher":{"login":"mitraak","name":null,"path":"/mitraak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16709900?s=80&v=4"},"commit":{"message":"save raw & carnation-ready obj","shortMessageHtmlLink":"save raw &amp; carnation-ready obj"}},{"before":"e78bca581d6f6a4ee4933db3df28abc067c0f929","after":"569889aadb5fa942ec466a6b19ff2007710882cc","ref":"refs/heads/carnation_obj","pushedAt":"2024-05-09T00:18:57.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mitraak","name":null,"path":"/mitraak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16709900?s=80&v=4"},"commit":{"message":"updt env-r.yml","shortMessageHtmlLink":"updt env-r.yml"}},{"before":null,"after":"e78bca581d6f6a4ee4933db3df28abc067c0f929","ref":"refs/heads/carnation_obj","pushedAt":"2024-05-08T19:03:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mitraak","name":null,"path":"/mitraak","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16709900?s=80&v=4"},"commit":{"message":"updt env-r.yml","shortMessageHtmlLink":"updt env-r.yml"}},{"before":"7f5f0ac9e47941d4b28caad22d94310c324fe072","after":null,"ref":"refs/heads/samtools-flagstat-stats","pushedAt":"2024-05-08T17:38:41.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"daler","name":"Ryan Dale","path":"/daler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/115406?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEYreitgA","startCursor":null,"endCursor":null}},"title":"Activity · lcdb/lcdb-wf"}