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utils.py
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utils.py
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# import libraries
import matplotlib as mpl
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
from pathos.multiprocessing import ProcessingPool as Pool
from scipy.stats import multivariate_t
from metrics import cluster_feats, div_frontier, frontier_integral
COLORS = plt.rcParams['axes.prop_cycle'].by_key()['color']
mpl.rcParams['lines.linewidth'] = 3
mpl.rcParams['xtick.labelsize'] = 12
mpl.rcParams['ytick.labelsize'] = 12
mpl.rcParams['axes.labelsize'] = 20
mpl.rcParams['legend.fontsize'] = 20
mpl.rcParams['axes.titlesize'] = 19
mpl.rcParams['lines.markersize'] = 7.5
mpl.rcParams["mathtext.fontset"] = 'cm'
plt.rcParams["font.family"] = "Times New Roman"
CORES = 4
################################################################
################################################################
# Computing divergences
################################################################
################################################################
def generate_data(size, dist, pars):
if dist == 'normal':
sample = np.random.multivariate_normal(pars[0], pars[1], size=size)
if dist == 't':
sample = multivariate_t.rvs(loc=pars[0], shape=pars[1], df=pars[2], size=size)
return sample
################################################################
# divergence frontier
################################################################
def sup_error(psample, qsample, estimator, supp, p, q, lambdas):
"""Compute the sup error of the empirical DF."""
phat = estimator(psample, supp)
qhat = estimator(qsample, supp)
emp_df = div_frontier(phat, qhat, lambdas)
df = div_frontier(p, q, lambdas)
diff = np.sum(np.abs(emp_df - df), axis=1)
#diff = np.sqrt(np.sum((emp_df - df)**2, axis=1))
return np.max(diff)
def construct_supe_dict(krange, nrange):
error = {
'Empirical': [], 'Good-Turing': [], 'Laplace': [],
'Krichevsky-Trofimov': [], 'Braess-Sauer': [],
'Bound': stat_error_bound(krange, nrange),
'Oracle bound': []}
return error
def compute_sup_error(p, q, n, error, lambdas):
"""Compute the absolute error of different distribution estimators.
"""
supp = len(p)
psample = np.random.choice(range(supp), size=n, p=p)
qsample = np.random.choice(range(supp), size=n, p=q)
error['Empirical'].append(sup_error(
psample, qsample, empirical_est, supp, p, q, lambdas))
error['Good-Turing'].append(sup_error(
psample, qsample, good_turing_est, supp, p, q, lambdas))
error['Laplace'].append(sup_error(
psample, qsample, laplace_est, supp, p, q, lambdas))
error['Krichevsky-Trofimov'].append(sup_error(
psample, qsample, krichevsky_trofimov_est, supp, p, q, lambdas))
error['Braess-Sauer'].append(sup_error(
psample, qsample, braess_sauer_est, supp, p, q, lambdas))
return error
def average_supe(error, supe):
nrepeat = len(error)
est = ['Empirical', 'Good-Turing', 'Laplace',
'Krichevsky-Trofimov', 'Braess-Sauer']
est_error = {name: [] for name in est}
for err in error:
for name in est:
est_error[name].append(err[name])
for name in est:
supe[f'{name} avg'] = np.mean(est_error[name], axis=0)
supe[f'{name} se'] = np.std(est_error[name], axis=0) / np.sqrt(nrepeat)
return pd.DataFrame(data=supe)
################################################################
# frontier integral
################################################################
def stat_error_bound(krange, nrange):
"""Compute the upper bound for the statistical error."""
bound = []
for k in krange:
for n in nrange:
bound.append(
(2*np.log(n)+1)*(k/n+np.sqrt(k/n)))
return np.array(bound)
def stat_error_oracle_bound(nrange, p, q):
"""Compute the oracle bound for the statistical error."""
# total variation
const = np.log(nrange) + 0.5
# const = 0.5
bound = const * np.sum(np.sqrt(p*(1-p))) / np.sqrt(nrange)
bound += const * np.sum(np.sqrt(q*(1-q))) / np.sqrt(nrange)
# missing mass
p_nonzero = p != 0
q_nonzero = q != 0
subp = p[p_nonzero]
subq = q[q_nonzero]
for i, n in enumerate(nrange):
bound[i] += np.sum((1-subp)**n * subp * (
np.maximum(1, np.log(1/subp)) + 0.5))
bound[i] += np.sum((1-subq)**n * subq * (
np.maximum(1, np.log(1/subq)) + 0.5))
return bound
def absolute_error(psample, qsample, estimator, supp, p, q):
"""Compute the absolute error of the empirical FI."""
phat = estimator(psample, supp)
qhat = estimator(qsample, supp)
emp_mr = frontier_integral(phat, qhat)
mr = frontier_integral(p, q)
return np.abs(emp_mr - mr)
def construct_mae_dict(krange, nrange):
error = {
'Empirical': [], 'Good-Turing': [], 'Laplace': [],
'Krichevsky-Trofimov': [], 'Braess-Sauer': [],
'Bound': stat_error_bound(krange, nrange),
'Oracle bound': []}
return error
def compute_absolute_error(p, q, n, error):
"""Compute the absolute error of different distribution estimators.
"""
supp = len(p)
psample = np.random.choice(range(supp), size=n, p=p)
qsample = np.random.choice(range(supp), size=n, p=q)
error['Empirical'].append(absolute_error(
psample, qsample, empirical_est, supp, p, q))
error['Good-Turing'].append(absolute_error(
psample, qsample, good_turing_est, supp, p, q))
error['Laplace'].append(absolute_error(
psample, qsample, laplace_est, supp, p, q))
error['Krichevsky-Trofimov'].append(absolute_error(
psample, qsample, krichevsky_trofimov_est, supp, p, q))
error['Braess-Sauer'].append(absolute_error(
psample, qsample, braess_sauer_est, supp, p, q))
return error
def average_mae(error, mae):
nrepeat = len(error)
est = ['Empirical', 'Good-Turing', 'Laplace',
'Krichevsky-Trofimov', 'Braess-Sauer',
'Bound', 'Oracle bound']
est_error = {name: [] for name in est}
for err in error:
for name in est:
est_error[name].append(err[name])
for name in est:
mae[f'{name} avg'] = np.mean(est_error[name], axis=0)
mae[f'{name} se'] = np.std(est_error[name], axis=0) / np.sqrt(nrepeat)
return pd.DataFrame(data=mae)
def average_quant(error, qe):
nrepeat = len(error)
strategy = ['Uniform', 'Greedy', 'Oracle']
quant_error = {name: [] for name in strategy}
for err in error:
for name in strategy:
quant_error[name].append(err[name])
for name in strategy:
qe[f'{name} avg'] = np.mean(quant_error[name], axis=0)
qe[f'{name} se'] = np.std(quant_error[name], axis=0) / np.sqrt(nrepeat)
return pd.DataFrame(data=qe)
def estimate_fi_cont(dist, pars, size, krange, quant='kmeans'):
"""Estimate the FI between continuous distributions."""
psample = generate_data(size, dist, pars[0])
qsample = generate_data(size, dist, pars[1])
est_fi = []
for k in krange:
if quant == 'kmeans':
phat, qhat = cluster_feats(psample, qsample, int(k))
else:
raise ValueError('Only k-means clustering is implemented.')
est_fi.append(frontier_integral(phat, qhat))
return np.array(est_fi)
################################################################
# distribution estimators
################################################################
def empirical_est(sample, supp):
return np.bincount(sample, minlength=supp) / (len(sample)+0.0)
def good_turing_est(sample, supp):
n = len(sample)
freq = np.bincount(sample, minlength=supp)
freq_hi = np.max(freq) + 1
trange = np.arange(freq_hi)
count = np.zeros(freq_hi, dtype=int)
for t in trange:
count[t] = np.sum(freq == t)
shat = count * trange / (n+0.0)
gt_ind = trange[:-1][trange[:-1] <= count[1:]]
shat[gt_ind] = (count[gt_ind+1] + 1.0)*(gt_ind + 1)/n
est = [shat[freq[a]]/count[freq[a]] for a in range(supp)]
return est / np.sum(est)
def laplace_est(sample, supp):
est = np.bincount(sample, minlength=supp) + 1
return est / np.sum(est)
def krichevsky_trofimov_est(sample, supp):
est = np.bincount(sample, minlength=supp) + 0.5
return est / np.sum(est)
def braess_sauer_est(sample, supp):
count = np.bincount(sample, minlength=supp)
est = np.array(count) + 0.0
est += 0.75
est[count == 0] -= 0.25
est[count == 1] += 0.25
return est / np.sum(est)
################################################################
################################################################
# synthetic data
################################################################
################################################################
def generate_dist(supp, dist_type, order=None, shuffle=False):
"""Generate distributions for synthetic data."""
if dist_type == 'step':
p = np.zeros(supp)
half = int(supp*0.5)
p[:half] = 0.5
p[half:] = 1.5
if dist_type == 'zipf':
p = 1/(np.arange(1, supp+1) + 0.0)**order
if dist_type == 'uniform':
p = np.random.dirichlet(np.ones(supp), size=1)[0]
if dist_type == 'dirichlet':
p = np.random.dirichlet(0.5*np.ones(supp), size=1)[0]
p = p / np.sum(p)
if shuffle:
np.random.shuffle(p)
return p
################################################################
# divergence frontier
################################################################
def _supe_varyn_synthetic(repeat, pdist, orderp, qdist, orderq,
supp, nrange, lambdas):
np.random.seed(repeat)
p = generate_dist(supp, pdist, order=orderp)
q = generate_dist(supp, qdist, order=orderq)
error = construct_supe_dict([supp], nrange)
error['Oracle bound'] = stat_error_oracle_bound(nrange, p, q)
for n in nrange:
error = compute_sup_error(p, q, n, error, lambdas)
return error
def supe_varyn_synthetic(supp, nrange, dist_pairs, lambdas, nrepeat=100,
prefix='../results/supe', save=True):
"""Compute sup error for varying sample size."""
dfs = []
for pair in dist_pairs:
pdist, orderp = pair[0]
qdist, orderq = pair[1]
def worker(repeat):
return _supe_varyn_synthetic(
repeat, pdist, orderp, qdist, orderq, supp, nrange, lambdas)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
supe = {'Sample size': nrange}
df = average_mae(error, supe)
if save:
fname = f'{prefix}/nvary-{pdist}{orderp}-{qdist}{orderq}-supp{supp}-df.pkl'
df.to_pickle(fname)
dfs.append(df)
return dfs
def _supe_varyk_synthetic(repeat, pdist, orderp, qdist,
orderq, krange, n, lambdas):
np.random.seed(repeat)
error = construct_supe_dict(krange, [n])
error['Oracle bound'] = np.zeros(len(krange))
for i, k in enumerate(krange):
p = generate_dist(k, pdist, order=orderp)
q = generate_dist(k, qdist, order=orderq)
error['Oracle bound'][i] = stat_error_oracle_bound([n], p, q)[0]
error = compute_sup_error(p, q, n, error, lambdas)
return error
def supe_varyk_synthetic(krange, n, dist_pairs, lambdas, nrepeat=100,
prefix='../results/supe', save=True):
"""Compute sup error for varying support size."""
dfs = []
for pair in dist_pairs:
pdist, orderp = pair[0]
qdist, orderq = pair[1]
def worker(repeat):
return _supe_varyk_synthetic(
repeat, pdist, orderp, qdist, orderq, krange, n, lambdas)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
supe = {'Support size': krange}
df = average_mae(error, supe)
if save:
fname = f'{prefix}/kvary-{pdist}{orderp}-{qdist}{orderq}-size{n}-df.pkl'
df.to_pickle(fname)
dfs.append(df)
return dfs
def _supe_tail_synthetic(repeat, pdist, orderp, qdist,
orderq, supp, n, lambdas):
# only orderq can be a list
np.random.seed(repeat)
error = construct_supe_dict([supp], [n]*len(orderq))
error['Oracle bound'] = np.zeros(len(orderq))
for i, rq in enumerate(orderq):
p = generate_dist(supp, pdist, order=orderp)
q = generate_dist(supp, qdist, order=rq)
error['Oracle bound'][i] = stat_error_oracle_bound([n], p, q)[0]
error = compute_sup_error(p, q, n, error, lambdas)
return error
def supe_tail_synthetic(supp, n, orderq, dists, lambdas, nrepeat=100,
prefix='../results/supe', save=True):
"""Compute sup for varying tail decay."""
qdist = 'zipf'
dfs = []
for (pdist, orderp) in dists:
def worker(repeat):
return _supe_tail_synthetic(
repeat, pdist, orderp, qdist, orderq, supp, n, lambdas)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
mae = {'Tail decay': orderq}
df = average_mae(error, mae)
if save:
fname = f'{prefix}/qvary-{pdist}{orderp}-supp{supp}-size{n}-df.pkl'
df.to_pickle(fname)
dfs.append(df)
return dfs
################################################################
# frontier integral
################################################################
def _mae_varyn_synthetic(repeat, pdist, orderp, qdist, orderq,
supp, nrange):
np.random.seed(repeat)
p = generate_dist(supp, pdist, order=orderp)
q = generate_dist(supp, qdist, order=orderq)
error = construct_mae_dict([supp], nrange)
error['Oracle bound'] = stat_error_oracle_bound(nrange, p, q)
for n in nrange:
error = compute_absolute_error(p, q, n, error)
return error
def mae_varyn_synthetic(supp, nrange, dist_pairs, nrepeat=100,
prefix='../results/mae', save=True):
"""Compute MAE for varying sample size."""
dfs = []
for pair in dist_pairs:
pdist, orderp = pair[0]
qdist, orderq = pair[1]
error = []
def worker(repeat):
return _mae_varyn_synthetic(
repeat, pdist, orderp, qdist, orderq, supp, nrange)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
mae = {'Sample size': nrange}
df = average_mae(error, mae)
if save:
fname = f'{prefix}/nvary-{pdist}{orderp}-{qdist}{orderq}-supp{supp}.pkl'
df.to_pickle(fname)
dfs.append(df)
return dfs
def _mae_varyk_synthetic(repeat, pdist, orderp, qdist,
orderq, krange, n):
np.random.seed(repeat)
error = construct_mae_dict(krange, [n])
error['Oracle bound'] = np.zeros(len(krange))
for i, k in enumerate(krange):
p = generate_dist(k, pdist, order=orderp)
q = generate_dist(k, qdist, order=orderq)
error['Oracle bound'][i] = stat_error_oracle_bound([n], p, q)[0]
error = compute_absolute_error(p, q, n, error)
return error
def mae_varyk_synthetic(krange, n, dist_pairs, nrepeat=100,
prefix='../results/mae', save=True):
"""Compute MAE for varying support size."""
dfs = []
for pair in dist_pairs:
pdist, orderp = pair[0]
qdist, orderq = pair[1]
def worker(repeat):
return _mae_varyk_synthetic(
repeat, pdist, orderp, qdist, orderq, krange, n)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
mae = {'Support size': krange}
df = average_mae(error, mae)
if save:
fname = f'{prefix}/kvary-{pdist}{orderp}-{qdist}{orderq}-size{n}.pkl'
df.to_pickle(fname)
dfs.append(df)
return dfs
def _mae_tail_synthetic(repeat, pdist, orderp, qdist,
orderq, supp, n):
# only orderq can be a list
np.random.seed(repeat)
error = construct_mae_dict([supp], [n]*len(orderq))
error['Oracle bound'] = np.zeros(len(orderq))
for i, rq in enumerate(orderq):
p = generate_dist(supp, pdist, order=orderp)
q = generate_dist(supp, qdist, order=rq)
error['Oracle bound'][i] = stat_error_oracle_bound([n], p, q)[0]
error = compute_absolute_error(p, q, n, error)
return error
def mae_tail_synthetic(supp, n, orderq, dists, nrepeat=100,
prefix='../results/mae', save=True):
"""Compute MAE for varying tail decay."""
qdist = 'zipf'
dfs = []
for (pdist, orderp) in dists:
def worker(repeat):
return _mae_tail_synthetic(
repeat, pdist, orderp, qdist, orderq, supp, n)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
mae = {'Tail decay': orderq}
df = average_mae(error, mae)
if save:
fname = f'{prefix}/qvary-{pdist}{orderp}-supp{supp}-size{n}.pkl'
df.to_pickle(fname)
dfs.append(df)
return dfs
def mae_quant_level(nrange, dists, pars, true_fis, nrepeat=100,
prefix='results/mae', fnames=None, save=True):
"""Compute MAE for varying sample size."""
rates = np.arange(2, 6).astype(int)
dfs = []
for i, (dist, par) in enumerate(zip(dists, pars)):
df = []
if i % 2 == 0:
const = 5
else:
const = 10
for size in nrange:
krange = (const * size**(1.0/rates)).astype(int)
def worker(repeat):
np.random.seed(repeat)
est_fi = estimate_fi_cont(dist, par, size, krange)
return np.abs(est_fi - true_fis[i])
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
df.append(np.concatenate(
[[size], np.mean(error, axis=0), np.std(error, axis=0)/nrepeat**0.5]))
if save:
fname = f'{prefix}/{fnames[i]}.txt'
np.savetxt(fname, df)
dfs.append(df)
return dfs
################################################################
################################################################
# real data
################################################################
################################################################
################################################################
# frontier integral
################################################################
def _mae_varyn_real(repeat, p, q, nrange):
np.random.seed(repeat)
supp = len(p)
error = construct_mae_dict([supp], nrange)
error['Oracle bound'] = stat_error_oracle_bound(nrange, p, q)
for n in nrange:
error = compute_absolute_error(p, q, n, error)
return error
def mae_varyn_real(p, q, nrange, nrepeat=100):
def worker(repeat):
return _mae_varyn_real(repeat, p, q, nrange)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
mae = {'Sample size': nrange}
df = average_mae(error, mae)
return df
def _mae_varyk_real(disc_dict, krange, repeat, n):
# disc_dict = {k: mauve_obj}
np.random.seed(repeat)
error = construct_mae_dict(krange, [n])
error['Oracle bound'] = np.zeros(len(krange))
for i, k in enumerate(krange):
# load p and q of size k
p = disc_dict[k].p_hist
q = disc_dict[k].q_hist
error['Oracle bound'][i] = stat_error_oracle_bound([n], p, q)[0]
error = compute_absolute_error(p, q, n, error)
return error
def mae_varyk_real(disc_dict, n, nrepeat=100):
krange = [k for k in list(disc_dict.keys()) if k >= 8]
def worker(repeat):
return _mae_varyk_real(disc_dict, krange, repeat, n)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
# compute avg and se
mae = {'Support size': krange}
df = average_mae(error, mae)
return df
################################################################
# divergence frontiers
################################################################
def _supe_varyn_real(repeat, p, q, nrange, lambdas):
np.random.seed(repeat)
supp = len(p)
error = construct_supe_dict([supp], nrange)
error['Oracle bound'] = stat_error_oracle_bound(nrange, p, q)
for n in nrange:
error = compute_sup_error(p, q, n, error, lambdas)
return error
def supe_varyn_real(p, q, nrange, lambdas, nrepeat=100):
def worker(repeat):
return _supe_varyn_real(repeat, p, q, nrange, lambdas)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
supe = {'Sample size': nrange}
df = average_mae(error, supe)
return df
def _supe_varyk_real(disc_dict, krange, repeat, n, lambdas):
# disc_dict = {k: mauve_obj}
np.random.seed(repeat)
error = construct_supe_dict(krange, [n])
error['Oracle bound'] = np.zeros(len(krange))
for i, k in enumerate(krange):
# load p and q of size k
p = disc_dict[k].p_hist
q = disc_dict[k].q_hist
error['Oracle bound'][i] = stat_error_oracle_bound([n], p, q)[0]
error = compute_sup_error(p, q, n, error, lambdas)
return error
def supe_varyk_real(disc_dict, n, lambdas, nrepeat=100):
krange = [k for k in list(disc_dict.keys()) if k >= 8]
def worker(repeat):
return _supe_varyk_real(disc_dict, krange, repeat, n, lambdas)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
# compute avg and se
supe = {'Support size': krange}
df = average_mae(error, supe)
return df
################################################################
# quantization
################################################################
def quantize(p, quant):
"""Quantize the distribution."""
out = []
for b in quant:
out.append(np.sum(p[b]))
return np.array(out)
def uniform_quant(p, nbin):
"""Uniform quantization."""
k = len(p)
bin_size = int(k / nbin)
quant = []
for i in range(nbin):
if i < nbin - 1:
quant.append(range(i*bin_size, (i+1)*bin_size))
else:
quant.append(range(i*bin_size, k))
return quant
def f_div(p, q):
"""Compute f-divergence."""
k = len(p)
out = np.zeros(k)
nonequal = p != q
pzero = (p == 0) & nonequal
out[pzero] = 0.5
qzero = (q == 0) & nonequal
out[qzero] = np.inf
ind = nonequal & (~pzero) & (~qzero)
x = p[ind] / q[ind]
out[ind] = (x + 1)*0.5 - x/(x-1)*np.log(x)
return out
def f_div_conj(p, q):
"""Compute the conjugate f-divergence."""
k = len(p)
out = np.zeros(k)
nonequal = p != q
pzero = (p == 0) & nonequal
out[pzero] = np.inf
qzero = (q == 0) & nonequal
out[qzero] = 0.5
ind = nonequal & (~pzero) & (~qzero)
x = q[ind] / p[ind]
out[ind] = (x + 1)*0.5 - x/(x-1)*np.log(x)
return out
def oracle_quant(p, q, nbin):
"""Oracle quantization."""
k = int(nbin/2)
# quantization based on p/q
smaller = p <= q
fdiv = f_div(p, q)
eps = 0.5 / k
quant1 = [[] for _ in range(k)]
for i, f in enumerate(fdiv):
if smaller[i]:
b = int(f / eps)
if b < k:
quant1[b].append(i)
if b == k:
quant1[b-1].append(i)
# quantization based on q/p
larger = p > q
fdiv = f_div_conj(p, q)
eps = 0.5 / k
quant2 = [[] for _ in range(k)]
for i, f in enumerate(fdiv):
if larger[i]:
b = int(f / eps)
if b < k:
quant2[b].append(i)
if b == k:
quant2[b-1].append(i)
return quant1 + quant2
def insert(edge, ind):
"""Insert an edge to the partition."""
if ind in edge:
raise ValueError('Index already exists.')
if len(edge) == 0:
return [ind]
index = len(edge)
for i, e in enumerate(edge):
if e > ind:
index = i
break
edge = edge[:index] + [ind] + edge[index:]
return edge
def merge_bin_fi(p, q, edge):
"""Compute the FI for the quantized distributions."""
N = len(p)
mauve = []
low = [0] + edge
high = edge + [N]
for lo, hi in zip(low, high):
if lo < hi:
mauve.append(frontier_integral(
np.sum(p[lo:hi], keepdims=True),
np.sum(q[lo:hi], keepdims=True)))
return mauve
def sort_ratio(p, q):
"""Sort p and q according to their ratios."""
zero = q == 0
ind = np.arange(len(q))
order = ind[zero]
nonzero = ~zero
ind = ind[nonzero]
tmp = np.argsort(p[nonzero] / q[nonzero])
order = np.concatenate([ind[tmp], order])
return p[order], q[order]
def greedy_quant(p, q, nbin, log=False):
"""Greedy quantization."""
N = len(p)
p, q = sort_ratio(p, q)
obj = []
edge = [] # edge belongs to the right bin
for k in range(nbin-1):
bin_mauve = merge_bin_fi(p, q, edge)
low = [0] + edge
high = edge + [N]
# add another edge
new_mauve = np.zeros(N)
for lo, hi in zip(low, high):
for ind in range(lo+1, hi): # tentative new edge
new_bin_mauve = merge_bin_fi(
p[lo:hi], q[lo:hi], [ind])
new_mauve[ind] = np.sum(bin_mauve) - merge_bin_fi(
p[lo:hi], q[lo:hi], [])[0] + np.sum(new_bin_mauve)
edge = insert(edge, np.argmax(new_mauve))
if log or (k == nbin-2):
obj.append(np.sum(merge_bin_fi(p, q, edge)))
return obj, edge
def _quant_synthetic(repeat, pdist, orderp, qdist,
orderq, supp, krange):
np.random.seed(repeat)
p = generate_dist(supp, pdist, order=orderp)
q = generate_dist(supp, qdist, order=orderq)
full = frontier_integral(p, q)
error = {'Uniform': [], 'Oracle': []}
greedy = np.array(greedy_quant(p, q, krange[-1], log=True)[0])
error['Greedy'] = full - greedy[krange - 2]
for k in krange:
quant = uniform_quant(p, k)
error['Uniform'].append(full - frontier_integral(p, q, quant))
quant = oracle_quant(p, q, k)
error['Oracle'].append(full - frontier_integral(p, q, quant))
return error
def quant_synthetic(supp, krange, dist_pairs, nrepeat=100,
prefix='../results/mae', save=True):
"""Compute MAE for population level quantization with varying support size."""
dfs = []
for pair in dist_pairs:
pdist, orderp = pair[0]
qdist, orderq = pair[1]
def worker(repeat):
return _quant_synthetic(
repeat, pdist, orderp, qdist, orderq, supp, krange)
with Pool(processes=CORES) as pool:
error = pool.map(worker, range(nrepeat))
qe = {'Number of bins': krange}
df = average_quant(error, qe)
if save:
fname = f'{prefix}/quant-{pdist}{orderp}-{qdist}{orderq}-supp{supp}.pkl'
df.to_pickle(fname)
dfs.append(df)
return dfs
################################################################
# plot
################################################################
def plot_stat_bound(dfs, xlabels, titles, const=100, fname=None, save=False, log_scale=True):
fig, axes = plt.subplots(nrows=1, ncols=4, sharey=True)
fig.set_figheight(4)
fig.set_figwidth(15)
axes[0].set_ylabel('Absolute error')
for i, df in enumerate(dfs):
xlabel = xlabels[i]
x = df[xlabel]
# empirical estimator
y = df['Empirical avg']
y_std = df['Empirical se']
axes[i].plot(x, y, label='Monte Carlo', color=COLORS[0], marker='8')
axes[i].fill_between(x, y-y_std, y+y_std, color=COLORS[0], alpha=0.3)
# oracle bound
y = df['Oracle bound avg']/const
y_std = df['Oracle bound se']
axes[i].plot(
x, y, label='Oracle bound', color=COLORS[1],
linestyle='-', marker='s')
axes[i].fill_between(x, y-y_std, y+y_std, color=COLORS[1], alpha=0.3)
# bound
y = df['Bound avg']/const
axes[i].plot(x, y, label='Bound', color=COLORS[2], linestyle='-.')
axes[i].set_xlabel(xlabel)
axes[i].set_title(titles[i])
if log_scale:
axes[i].set_yscale('log')
if xlabel != 'Tail decay':
axes[i].set_xscale('log')
handles, labels = axes[0].get_legend_handles_labels()
fig.tight_layout()
lgd = fig.legend(
handles, labels, loc='lower center',
bbox_to_anchor=(0.5, -0.14), ncol=3)
if save:
fig.savefig(
fname, bbox_extra_artists=[lgd], bbox_inches='tight')
else:
plt.show()
def plot_dist_est(dfs, xlabels, titles, ylabel='Absolute error', fname=None, save=False, log_scale=True):
linestyle = ['-', '--', '-.', (0, (1, 1)), '-']
marker = ['8', 's', '', '', '^']
est_name = ['Empirical', 'Braess-Sauer', 'Good-Turing', 'Krichevsky-Trofimov', 'Laplace']
fig, axes = plt.subplots(nrows=1, ncols=4, sharey=True)
fig.set_figheight(4)
fig.set_figwidth(15)
axes[0].set_ylabel(ylabel)
for i, df in enumerate(dfs):
xlabel = xlabels[i]
for j, ename in enumerate(est_name):
x = df[xlabel]
y = df[f'{ename} avg']
y_std = df[f'{ename} se']
axes[i].plot(
x, y, label=ename, color=COLORS[j],
linestyle=linestyle[j], marker=marker[j])
axes[i].fill_between(
x, y-y_std, y+y_std, color=COLORS[j], alpha=0.3)
axes[i].set_title(titles[i])
axes[i].set_xlabel(xlabel)
if log_scale:
axes[i].set_yscale('log')
if xlabel != 'Tail decay':
axes[i].set_xscale('log')
handles, labels = axes[0].get_legend_handles_labels()
fig.tight_layout(rect=[0, 0, 1, 1]) # L, B, R, T
lgd = fig.legend(
handles, labels, loc='lower center',
bbox_to_anchor=(0.5, -0.14), ncol=len(est_name))
if save:
fig.savefig(
fname, bbox_extra_artists=[lgd], bbox_inches='tight')
else:
plt.show()
def plot_quant_error(dfs, xlabels, titles, fname=None, save=False):
fig, axes = plt.subplots(nrows=1, ncols=4, sharey=True)
fig.set_figheight(4)
fig.set_figwidth(15)
axes[0].set_ylabel('Absolute error')
for i, df in enumerate(dfs):
xlabel = xlabels[i]
x = df[xlabel]
# greedy quantization
y = df['Greedy avg']
y_std = df['Greedy se']
axes[i].plot(x, y, label='Greedy', color=COLORS[0], marker='8')
axes[i].fill_between(x, y-y_std, y+y_std, color=COLORS[1], alpha=0.3)
# oracle quantization
y = df['Oracle avg']
y_std = df['Oracle se']
axes[i].plot(x, y, label='Oracle', color=COLORS[1], linestyle='--', marker='s')
axes[i].fill_between(x, y-y_std, y+y_std, color=COLORS[2], alpha=0.3)
# uniform quantization
y = df['Uniform avg']
y_std = df['Uniform se']
axes[i].plot(x, y, label='Uniform', color=COLORS[2], linestyle='-.')
axes[i].fill_between(x, y-y_std, y+y_std, color=COLORS[0], alpha=0.3)
axes[i].set_title(titles[i])
axes[i].set_xlabel(xlabel)
axes[i].set_yscale('log')
axes[i].set_xscale('log')
handles, labels = axes[0].get_legend_handles_labels()
fig.tight_layout()
lgd = fig.legend(
handles, labels, loc='lower center',
bbox_to_anchor=(0.5, -0.14), ncol=3)
if save:
fig.savefig(
fname, bbox_extra_artists=[lgd], bbox_inches='tight')
else:
plt.show()
def plot_quant_level(dfs, nrates, titles, xlabel='Sample size', ylabel='Absolute error', fname=None, save=False):
linestyle = ['-', '--', '-.', (0, (1, 1)), '-']
marker = ['8', 's', '', '', '^']
fig, axes = plt.subplots(nrows=1, ncols=4, sharey=True)
fig.set_figheight(4)
fig.set_figwidth(15)
axes[0].set_ylabel(ylabel)
for i, df in enumerate(dfs):
x = df[:, 0]
for r in range(nrates):
y = df[:, r+1]
y_std = df[:, nrates+r+1]
axes[i].plot(
x, y, label=r'$r = $' + str(r+2), color=COLORS[r],
linestyle=linestyle[r], marker=marker[r])
axes[i].fill_between(
x, y-y_std, y+y_std, color=COLORS[r], alpha=0.3)
axes[i].set_title(titles[i])
axes[i].set_xlabel(xlabel)
axes[i].set_yscale('log')