manual_fix_world_matrix.mlab

// MDL v1 utf8
network  {
  watchlist = ""
}
module itkImageFileWriter {
  internal  {
    frame = "349 181 136 56"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "2251 296 927 526"
        sizeHint = "293 418"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = NIFTIOUTPUT
    useCompression = FALSE
    correctSubVoxelShift = FALSE
    forceDirectionCosineWrite = TRUE
    outputVoxelType = Automatic
    info = "File saved successfully"
    unresolvedFileName = $(DicomBrowserPath)/4_wmh_cases_collected/100152/100152_WMH_FLAIRspace_MLABfix.nii.gz
  }
}
module Info {
  internal  {
    frame = "681 301 128 72"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "2558 666 618 384"
        sizeHint = "618 384"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = INFOREFERENCE
  }
}
module Info {
  internal  {
    frame = "177 301 112 72"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "1939 666 618 384"
        sizeHint = "618 384"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = INFOSOURCE
  }
}
module SetWorldMatrix {
  internal  {
    frame = "373 333 120 56"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "2726 165 528 355"
        sizeHint = "471 355"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = SetWorldMatrix
    center = "0 0 0"
    scaleOrientation = "0 0 1 0"
    scale = "1 1 1"
    rotation = "0 0 1 0"
    translation = "0 0 0"
    sourceUsage = Ignore
    referenceUsage = Forward
    elementaryUsage = Ignore
    invertResult = FALSE
    setCInfo = FALSE
    setTInfo = FALSE
    setUInfo = FALSE
  }
}
module itkImageFileReader {
  internal  {
    frame = "501 421 152 56"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "2956 627 786 431"
        sizeHint = "323 431"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = ReferenceImageT2FLAIR
    fileDataType = int32
    autoDetermineDataType = FALSE
    correctSubVoxelShift = FALSE
    fileDimension = 3
    info = "Loading okay."
    numDims = 3
    fileType = TypeNotApplicable
    componentType = float
    pixelType = SCALAR
    loaderType = NiftiImageIO
    outputMetaDataStr = "ITK_FileNotes : FSL5.0
aux_file : 
bitpix : 32
cal_max : 0
cal_min : 0
datatype : 16
descrip : FSL5.0
dim[0] : 3
dim[1] : 176
dim[2] : 256
dim[3] : 256
dim[4] : 1
dim[5] : 1
dim[6] : 1
dim[7] : 1
dim_info : 
intent_code : 0
intent_name : 
intent_p1 : 0
intent_p2 : 0
intent_p3 : 0
pixdim[0] : 1
pixdim[1] : 1
pixdim[2] : 1
pixdim[3] : 1
pixdim[4] : 5
pixdim[5] : 0
pixdim[6] : 0
pixdim[7] : 0
qform_code : 1
qoffset_x : -119.331
qoffset_y : -121.652
qoffset_z : -137.235
quatern_b : 0.0458373
quatern_c : 0.083519
quatern_d : -0.0134084
scl_inter : 0
scl_slope : 1
sform_code : 1
slice_code : 
slice_duration : 0
slice_end : 0
slice_start : 0
srow_x : 0.985694 0.034349 0.165034 -119.331
srow_y : -0.019036 0.995438 -0.093489 -121.652
srow_z : -0.167493 0.0890096 0.981847 -137.235
toffset : 0
vox_offset : 352
xyzt_units : 

"
    suppressErrorPosting = FALSE
    unresolvedFileName = $(DicomBrowserPath)/4_wmh_cases_collected/100152/t2_flair_3d.nii
  }
}
module itkImageFileReader {
  internal  {
    frame = "297 429 144 56"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "1997 634 1156 431"
        sizeHint = "323 431"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = WMHFLAIRspaceBINMAP
    fileDataType = int8
    autoDetermineDataType = FALSE
    correctSubVoxelShift = FALSE
    fileDimension = 3
    info = "Loading okay."
    numDims = 3
    fileType = TypeNotApplicable
    componentType = double
    pixelType = SCALAR
    loaderType = NiftiImageIO
    outputMetaDataStr = "ITK_FileNotes : FSL5.0
aux_file : 
bitpix : 64
cal_max : 0
cal_min : 0
datatype : 64
descrip : FSL5.0
dim[0] : 3
dim[1] : 176
dim[2] : 256
dim[3] : 256
dim[4] : 1
dim[5] : 1
dim[6] : 1
dim[7] : 1
dim_info : 
intent_code : 0
intent_name : 
intent_p1 : 0
intent_p2 : 0
intent_p3 : 0
pixdim[0] : 1
pixdim[1] : 1
pixdim[2] : 1
pixdim[3] : 1
pixdim[4] : 0
pixdim[5] : 0
pixdim[6] : 0
pixdim[7] : 0
qform_code : 2
qoffset_x : -121.469
qoffset_y : -121.334
qoffset_z : -135.06
quatern_b : 0.0433895
quatern_c : 0.0885091
quatern_d : -0.0187064
scl_inter : 0
scl_slope : 1
sform_code : 2
slice_code : 
slice_duration : 0
slice_end : 0
slice_start : 0
srow_x : 0.983637 0.0449048 0.174502 -121.469
srow_y : -0.0295434 0.995535 -0.0896525 -121.334
srow_z : -0.177749 0.0830299 0.980567 -135.06
toffset : 0
vox_offset : 352
xyzt_units : 

"
    suppressErrorPosting = FALSE
    unresolvedFileName = $(DicomBrowserPath)/4_wmh_cases_collected/100152/100152_WMH_FLAIRspace.nii.gz
  }
}
module View3D {
  internal  {
    frame = "929 317 144 56"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "2356 229 1046 664"
        sizeHint = "1046 664"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = View3D
    autoViewAll = TRUE
    inventorInputOn = TRUE
    inventorOutputOn = FALSE
    lutType = Ramp
    currentTimePoint = 0
    staticSamplingRate = 1
    quality = 1
    filterVolumeData = FilterLinear
    lutEditorColorPoints = "[ 0 0 0 0, 4095 1 1 1 ]"
    lutEditorAlphaPoints = "[ 0 0, 4095 1 ]"
    lutEditorRelativeLut = FALSE
    lutEditorColorInterpolation = InterpolateRGB
    lutEditorAlphaFactor = 1
    orientationProjectionType = PERSPECTIVE
    orientationLocation = LOWER_RIGHT
    orientationOn = TRUE
    orientationModel = CUBE
    greyCenter = 0.627500236034393
    greyWidth = 0.554999947547913
    alphaFactor = 1
    colorFactor = "1 1 1"
    camType = TRUE
    camPosition = "449.693817138672 -221.456771850586 189.507537841797"
    camOrientation = "0.67613959312439 0.450386762619019 0.583084046840668 1.51262140274048"
    initialCameraOrientation = CAMERA_KEEP_AS_IS
    camFar = 724.08917
    camNear = 372.12558
    camFocal = 547.93188
    camHeight = 0.78539801
    decoration = FALSE
    hiResRendering = TRUE
    annotations = TRUE
    background = TRUE
    mode = VolumeRendering
    interactiveQuality = Medium
  }
  internalFields  {
    renderer.gradientQuality = GradientQualityAutomatic
    renderer.enhancementAlphaMix = 0.25
    renderer.boundaryEnhancement = FALSE
    renderer.boundaryEnhancementFactor = 1
    renderer.boundaryEnhancementExponent = 1
    renderer.boundaryEnhancementGradientBias = 0
    renderer.silhouetteEnhancement = FALSE
    renderer.silhouetteEnhancementExponent = 1
    renderer.silhouetteEnhancementFactor = 1
    renderer.toneShading = FALSE
    renderer.toneShadingWarmColor = "0.67451000213623 0.533333003520966 0.141176000237465"
    renderer.toneShadingColdColor = "0 0 0.400000005960464"
    renderer.toneShadingWarmDiffuse = 0.60000002
    renderer.toneShadingColdDiffuse = 0.2
    renderer.toneShadingAngle = 45
    renderer.materialAmbient = 0.60000002
    renderer.materialDiffuse = 1
    renderer.materialSpecular = 1
    renderer.materialSpecularity = 32
    renderer.light1Enabled = TRUE
    renderer.light1DiffuseIntensity = 1
    renderer.light1SpecularIntensity = 1
    renderer.light1Color = "1 1 1"
    renderer.light1PolarPhi = 45
    renderer.light1PolarRho = 0
    renderer.light2Enabled = FALSE
    renderer.light2DiffuseIntensity = 1
    renderer.light2SpecularIntensity = 1
    renderer.light2Color = "1 1 1"
    renderer.light2PolarPhi = 0
    renderer.light2PolarRho = 0
    renderer.light3Enabled = FALSE
    renderer.light3DiffuseIntensity = 1
    renderer.light3SpecularIntensity = 1
    renderer.light3Color = "1 1 1"
    renderer.light3PolarPhi = -45
    renderer.light3PolarRho = 0
    renderer.sizeOutputX = 176
    renderer.sizeOutputY = 256
    renderer.sizeOutputZ = 256
    renderer.subVolumeStartX = 0
    renderer.subVolumeStartY = 0
    renderer.subVolumeStartZ = 0
    renderer.subVolumeEndX = 176
    renderer.subVolumeEndY = 256
    renderer.subVolumeEndZ = 256
    clip.hideGeometry = FALSE
    clip.on = FALSE
    clip.left = FALSE
    clip.right = FALSE
    clip.top = FALSE
    clip.bottom = FALSE
    clip.rear = FALSE
    clip.front = FALSE
    clip.translation0 = "1 0 0"
    clip.translation1 = "-1 0 0"
    clip.translation2 = "0 1 0"
    clip.translation3 = "0 -1 0"
    clip.translation4 = "0 0 1"
    clip.translation5 = "0 0 -1"
    clip.rotation0 = "0 0 0.999999940395355 1.57079994678497"
    clip.rotation1 = "0 0 -0.999999940395355 1.57079994678497"
    clip.rotation2 = "0 0 -1 3.1415901184082"
    clip.rotation3 = "0 0 1 0"
    clip.rotation4 = "-0.999999940395355 0 0 1.57079994678497"
    clip.rotation5 = "0.999999940395355 0 0 1.57079994678497"
  }
}
module View2D {
  internal  {
    frame = "805 317 120 56"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "2630 410 400 400"
        sizeHint = "400 400"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = View2D
    inventorInputOn = TRUE
    inventorOutputOn = FALSE
    view2DExtensionsOn = TRUE
    startSlice = 128
    numSlices = 1
    numXSlices = 1
    sliceStep = 1
    slab = 1
    blendMode = BLEND_REPLACE
    timePoint = 0
    maxTimePoint = 0
    filterMode = FILTER_LINEAR
    standardKeys = TRUE
    cineMode = CINE_ZT
    cineDirection = CINE_FORWARD
    cineRepeat = CINE_ONCE
    cineSpeed = 0.1
    cineAlwaysReset = TRUE
    snapToCenter = TRUE
    zoomMode = VIEW2D_AUTO_ZOOM
    unzoomOnImageChange = FALSE
    sliceZoom = 1
    sliceZoomSynced = 1
    baseColor = "1 1 1"
    margin = "2 2"
    sliceOrigin = "0 0"
    useShaders = TRUE
    useManagedInteraction = FALSE
    lutCenter = 252
    lutWidth = 504
    annotationOn = TRUE
    annotationMode = ANNO_MODE_AUTO
    annotationSizeMode = ANNO_SHOW_DETAILED
    annotationCol = "0.899999976158142 0.899999976158142 0.899999976158142"
    annotationFontSize = ANNO_SIZE_AUTO
    annoCoords = Voxel
    annoCTValue = AsIs
    borderOn = FALSE
    borderColor = "0.899999976158142 0.899999976158142 0.899999976158142"
    valueHighPrecision = TRUE
    showColorChannelValues = FALSE
    colorChannelSeparator = " / "
    maxPrecision = 4
    enableSlicing = TRUE
    useRelativeLUTIfNoInputImage = TRUE
    hiResRendering = TRUE
  }
}
module View3D {
  internal  {
    frame = "33 309 144 56"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "2356 229 1046 664"
        sizeHint = "1046 664"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = View3D1
    autoViewAll = TRUE
    inventorInputOn = TRUE
    inventorOutputOn = FALSE
    lutType = Ramp
    currentTimePoint = 0
    staticSamplingRate = 1
    quality = 1
    filterVolumeData = FilterLinear
    lutEditorColorPoints = "[ 0 0 0 0, 4095 1 1 1 ]"
    lutEditorAlphaPoints = "[ 0 0, 4095 1 ]"
    lutEditorRelativeLut = FALSE
    lutEditorColorInterpolation = InterpolateRGB
    lutEditorAlphaFactor = 1
    orientationProjectionType = PERSPECTIVE
    orientationLocation = LOWER_RIGHT
    orientationOn = TRUE
    orientationModel = CUBE
    greyCenter = 0.5
    greyWidth = 0.5
    alphaFactor = 1
    colorFactor = "1 1 1"
    camType = TRUE
    camPosition = "260.64794921875 -406.217132568359 173.480850219727"
    camOrientation = "0.888796508312225 0.43454372882843 0.145645529031754 1.21460700035095"
    initialCameraOrientation = CAMERA_KEEP_AS_IS
    camFar = 720.74622
    camNear = 336.02283
    camFocal = 528.19269
    camHeight = 0.78539801
    decoration = FALSE
    hiResRendering = TRUE
    annotations = TRUE
    background = TRUE
    mode = VolumeRendering
    interactiveQuality = Medium
  }
  internalFields  {
    renderer.gradientQuality = GradientQualityAutomatic
    renderer.enhancementAlphaMix = 0.25
    renderer.boundaryEnhancement = FALSE
    renderer.boundaryEnhancementFactor = 1
    renderer.boundaryEnhancementExponent = 1
    renderer.boundaryEnhancementGradientBias = 0
    renderer.silhouetteEnhancement = FALSE
    renderer.silhouetteEnhancementExponent = 1
    renderer.silhouetteEnhancementFactor = 1
    renderer.toneShading = FALSE
    renderer.toneShadingWarmColor = "0.67451000213623 0.533333003520966 0.141176000237465"
    renderer.toneShadingColdColor = "0 0 0.400000005960464"
    renderer.toneShadingWarmDiffuse = 0.60000002
    renderer.toneShadingColdDiffuse = 0.2
    renderer.toneShadingAngle = 45
    renderer.materialAmbient = 0.60000002
    renderer.materialDiffuse = 1
    renderer.materialSpecular = 1
    renderer.materialSpecularity = 32
    renderer.light1Enabled = TRUE
    renderer.light1DiffuseIntensity = 1
    renderer.light1SpecularIntensity = 1
    renderer.light1Color = "1 1 1"
    renderer.light1PolarPhi = 45
    renderer.light1PolarRho = 0
    renderer.light2Enabled = FALSE
    renderer.light2DiffuseIntensity = 1
    renderer.light2SpecularIntensity = 1
    renderer.light2Color = "1 1 1"
    renderer.light2PolarPhi = 0
    renderer.light2PolarRho = 0
    renderer.light3Enabled = FALSE
    renderer.light3DiffuseIntensity = 1
    renderer.light3SpecularIntensity = 1
    renderer.light3Color = "1 1 1"
    renderer.light3PolarPhi = -45
    renderer.light3PolarRho = 0
    renderer.sizeOutputX = 176
    renderer.sizeOutputY = 256
    renderer.sizeOutputZ = 256
    renderer.subVolumeStartX = 0
    renderer.subVolumeStartY = 0
    renderer.subVolumeStartZ = 0
    renderer.subVolumeEndX = 176
    renderer.subVolumeEndY = 256
    renderer.subVolumeEndZ = 256
    clip.hideGeometry = FALSE
    clip.on = FALSE
    clip.left = FALSE
    clip.right = FALSE
    clip.top = FALSE
    clip.bottom = FALSE
    clip.rear = FALSE
    clip.front = FALSE
    clip.translation0 = "1 0 0"
    clip.translation1 = "-1 0 0"
    clip.translation2 = "0 1 0"
    clip.translation3 = "0 -1 0"
    clip.translation4 = "0 0 1"
    clip.translation5 = "0 0 -1"
    clip.rotation0 = "0 0 0.999999940395355 1.57079994678497"
    clip.rotation1 = "0 0 -0.999999940395355 1.57079994678497"
    clip.rotation2 = "0 0 -1 3.1415901184082"
    clip.rotation3 = "0 0 1 0"
    clip.rotation4 = "-0.999999940395355 0 0 1.57079994678497"
    clip.rotation5 = "0.999999940395355 0 0 1.57079994678497"
  }
}
module View2D {
  internal  {
    frame = "-91 309 120 56"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "2679 361 400 400"
        sizeHint = "400 400"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = View2D1
    inventorInputOn = TRUE
    inventorOutputOn = FALSE
    view2DExtensionsOn = TRUE
    startSlice = 128
    numSlices = 1
    numXSlices = 1
    sliceStep = 1
    slab = 1
    blendMode = BLEND_REPLACE
    timePoint = 0
    maxTimePoint = 0
    filterMode = FILTER_LINEAR
    standardKeys = TRUE
    cineMode = CINE_ZT
    cineDirection = CINE_FORWARD
    cineRepeat = CINE_ONCE
    cineSpeed = 0.1
    cineAlwaysReset = TRUE
    snapToCenter = TRUE
    zoomMode = VIEW2D_AUTO_ZOOM
    unzoomOnImageChange = FALSE
    sliceZoom = 1
    sliceZoomSynced = 1
    baseColor = "1 1 1"
    margin = "2 2"
    sliceOrigin = "0 0"
    useShaders = TRUE
    useManagedInteraction = FALSE
    lutCenter = 0.5
    lutWidth = 1
    annotationOn = TRUE
    annotationMode = ANNO_MODE_AUTO
    annotationSizeMode = ANNO_SHOW_DETAILED
    annotationCol = "0.899999976158142 0.899999976158142 0.899999976158142"
    annotationFontSize = ANNO_SIZE_AUTO
    annoCoords = Voxel
    annoCTValue = AsIs
    borderOn = FALSE
    borderColor = "0.899999976158142 0.899999976158142 0.899999976158142"
    valueHighPrecision = TRUE
    showColorChannelValues = FALSE
    colorChannelSeparator = " / "
    maxPrecision = 4
    enableSlicing = TRUE
    useRelativeLUTIfNoInputImage = TRUE
    hiResRendering = TRUE
  }
}
module Info {
  internal  {
    frame = "485 173 136 72"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "3179 665 618 384"
        sizeHint = "618 384"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = INFOCORRECTED
  }
}
module SynchroView2D {
  internal  {
    frame = "625 181 128 56"
    moduleGroupName = ""
    windows  {
      window _default {
        geometry = "2947 228 804 400"
        sizeHint = "804 400"
        wasOpen = no
      }
    }
  }
  fields  {
    instanceName = SynchroView2D
    leftInventorInputOn = FALSE
    rightInventorInputOn = FALSE
    synchSlicing = TRUE
    synchZooming = TRUE
    synchTiming = TRUE
    synchLUTs = FALSE
    disconnectOnHide = TRUE
    hiResRendering = FALSE
    snapToCenter1 = FALSE
    snapToCenter2 = FALSE
    slice1 = 156
    timepoint1 = 0
    filterMode = FILTER_LINEAR
    slice2 = 156
    timepoint2 = 0
    lut1w = 1
    lut1c = 0.5
    lut2w = 790
    lut2c = 395
    annotationColor = "0.899999976158142 0.899999976158142 0.899999976158142"
    borderOn = FALSE
    drawCurrentPos = FALSE
    showCurrentPos = FALSE
    worldPosition = "-21.8003387451172 -4.3472900390625 45.518928527832"
    background = "0 0 0"
  }
}
connections  {
  NIFTIOUTPUT.input0 = SetWorldMatrix.output0
  INFOREFERENCE.input0 = ReferenceImageT2FLAIR.output0
  INFOSOURCE.input0 = WMHFLAIRspaceBINMAP.output0
  SetWorldMatrix.input0 = WMHFLAIRspaceBINMAP.output0
  SetWorldMatrix.input1 = ReferenceImageT2FLAIR.output0
  View3D.inImage = ReferenceImageT2FLAIR.output0
  View2D.inImage = ReferenceImageT2FLAIR.output0
  View3D1.inImage = WMHFLAIRspaceBINMAP.output0
  View2D1.inImage = WMHFLAIRspaceBINMAP.output0
  INFOCORRECTED.input0 = SetWorldMatrix.output0
  SynchroView2D.inImage1 = SetWorldMatrix.output0
  SynchroView2D.inImage2 = ReferenceImageT2FLAIR.output0
}
networkModel = ""