Popular repositories

1. GenoCaller_indent GenoCaller_indent Public

   aDNA_GenoCaller is a python program that calls genotypes from bam files at positions/regions specified in a bam file while ignoring a user-specified number of bases at the ends of reads

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2. aDNA_GenoCaller aDNA_GenoCaller Public

   aDNA_GenoCaller is a python program that calls genotypes from bam files at positions/regions specified in a bam file while taking into account post mortem damage as estimate by MapDamage

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3. vcf2fasta vcf2fasta Public

   Small script to extract fasta files from specific regions from a vcf file

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4. Dstat_vcf Dstat_vcf Public

   Python script to calculate D-statistics directly from VCF

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5. Lynch-PoolSeq-estimator Lynch-PoolSeq-estimator Public

   Maximum likelihood estimator of population allele frequencies from Pool-seq data using the method of Lynch et al.GBE.2014

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6. AF_estimate_pyvcf AF_estimate_pyvcf Public

   This python script takes a vcf file and calculates allele frequencies using genotype likelihoods for a subset of individuals at specific loci using the method of Kim et al. BMC Bioinformatics 2011

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