test.code

Command Cheat Sheet

Burn Server

Virtual Environment

ssh burn
export PATH="/scratch/$USER/miniconda/base/bin:/scratch/$USER/matlab-api:$PATH"
source activate venv

source deactivate

DataStore Directory

cd /exports/csce/datastore/geos/users/$USER/GitHub/Machine-Learning-Climate-Parameterization/main/
gio open .
wget -m <ftp-link>

Tensorboard

python -m tensorboard.main --logdir=./log/<runID>
localhost:6006

PUMA

ssh -Y <UUN>@puma.nerc.ac.uk
umui &
rosie go &
ssh -l <k...> login.archer.ac.uk
qstat -u <k...>

grep -r <search> .

ps -flu <UUN> | grep <SUITE>
kill -9 <PID>

Eddie

ssh -Y eddie
ssh <UUN>@eddie3.ecdf.ed.ac.uk
qsub
qstat
rsync

Fix Rosie Go on Eddie

Add the following line at the bottom of ~/.bashrc

export PATH="$PATH:/exports/csce/eddie/geos/groups/cesd/sw/rose/bin"

Git Basics

Creation

git init <new_repo>
git clone https://github.com/edenau/<repo.git>

Remote Link

git remote -v
git remote add upstream <upstream-repo.git>
git fetch upstream
git merge upstream/gh-pages

Pull

git fetch
git pull
git pull origin <branch>

Push

git status
git add -A
git reset <file>
git commit -m "MESSAGE"
git push -u origin master

Miscellaneous

git remote set-url <url>
git log

Python

xarray Basics

ncdump -h
ncview

import xarray as xr
DS = xr.open_dataset('data.cdf')
DS = xr.open_mfdataset('*.cdf')
DS.var
DS.coords['lat'].values
da.sel(lat=50, method='nearest')
da.time.dt.year/dayofweek/dayofyear/month/day.to_index()
DS_da.merge([T,rh,u,v])
DS.to_dataframe

.ipynb to .py

ipython nbconvert <file.ipynb> --to python

Run Pascal in Mac OS

MACOSX_DEPLOYMENT_TARGET=10.12 fpc <hello.pas>