/
cosa_fva_aerobic.py
147 lines (145 loc) · 3.95 KB
/
cosa_fva_aerobic.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
"""Run of thermodynamics-using FVAs under aerobic conditions and glucose."""
from cosa_fva import cosa_single_swap_test
import ray
ray.init(log_to_driver=False)
for base_nadx_scenario in ("WILDTYPE", "FLEXIBLE", "SINGLE_COFACTOR"):
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_868",
# mu=0.868,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_818",
# mu=0.818,
# base_nadx_scenario=base_nadx_scenario
# )
cosa_single_swap_test(
anaerobic=False,
reac_id="TEST_0_868",
mu=0.868,
base_nadx_scenario=base_nadx_scenario,
activate_reactions=[],
)
cosa_single_swap_test(
anaerobic=False,
reac_id="TEST_0_868",
mu=0.868,
base_nadx_scenario=base_nadx_scenario,
activate_reactions=["PYK"],
)
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_768",
# mu=0.768,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_718",
# mu=0.718,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_668",
# mu=0.668,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_618",
# mu=0.618,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_568",
# mu=0.568,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_518",
# mu=0.518,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_468",
# mu=0.468,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_418",
# mu=0.418,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_368",
# mu=0.418,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_418",
# mu=0.418,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_368",
# mu=0.368,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_318",
# mu=0.318,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_268",
# mu=0.268,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_218",
# mu=0.218,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_168",
# mu=0.168,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_118",
# mu=0.118,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_068",
# mu=0.068,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_05",
# mu=0.05,
# base_nadx_scenario=base_nadx_scenario
# )
# cosa_single_swap_test(
# anaerobic=False,
# reac_id="TEST_0_03",
# mu=0.03,
# base_nadx_scenario=base_nadx_scenario
# )