bookdown-demo.tex

\documentclass[]{book}
\usepackage{lmodern}
\usepackage{amssymb,amsmath}
\usepackage{ifxetex,ifluatex}
\usepackage{fixltx2e} % provides \textsubscript
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
  \usepackage[T1]{fontenc}
  \usepackage[utf8]{inputenc}
\else % if luatex or xelatex
  \ifxetex
    \usepackage{mathspec}
  \else
    \usepackage{fontspec}
  \fi
  \defaultfontfeatures{Ligatures=TeX,Scale=MatchLowercase}
\fi
% use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
% use microtype if available
\IfFileExists{microtype.sty}{%
\usepackage{microtype}
\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
}{}
\usepackage{hyperref}
\hypersetup{unicode=true,
            pdftitle={Statistical Data Management},
            pdfauthor={Authors},
            pdfborder={0 0 0},
            breaklinks=true}
\urlstyle{same}  % don't use monospace font for urls
\usepackage{natbib}
\bibliographystyle{apalike}
\usepackage{color}
\usepackage{fancyvrb}
\newcommand{\VerbBar}{|}
\newcommand{\VERB}{\Verb[commandchars=\\\{\}]}
\DefineVerbatimEnvironment{Highlighting}{Verbatim}{commandchars=\\\{\}}
% Add ',fontsize=\small' for more characters per line
\usepackage{framed}
\definecolor{shadecolor}{RGB}{248,248,248}
\newenvironment{Shaded}{\begin{snugshade}}{\end{snugshade}}
\newcommand{\AlertTok}[1]{\textcolor[rgb]{0.94,0.16,0.16}{#1}}
\newcommand{\AnnotationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
\newcommand{\AttributeTok}[1]{\textcolor[rgb]{0.77,0.63,0.00}{#1}}
\newcommand{\BaseNTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{#1}}
\newcommand{\BuiltInTok}[1]{#1}
\newcommand{\CharTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
\newcommand{\CommentTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textit{#1}}}
\newcommand{\CommentVarTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
\newcommand{\ConstantTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
\newcommand{\ControlFlowTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{\textbf{#1}}}
\newcommand{\DataTypeTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{#1}}
\newcommand{\DecValTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{#1}}
\newcommand{\DocumentationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
\newcommand{\ErrorTok}[1]{\textcolor[rgb]{0.64,0.00,0.00}{\textbf{#1}}}
\newcommand{\ExtensionTok}[1]{#1}
\newcommand{\FloatTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{#1}}
\newcommand{\FunctionTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
\newcommand{\ImportTok}[1]{#1}
\newcommand{\InformationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
\newcommand{\KeywordTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{\textbf{#1}}}
\newcommand{\NormalTok}[1]{#1}
\newcommand{\OperatorTok}[1]{\textcolor[rgb]{0.81,0.36,0.00}{\textbf{#1}}}
\newcommand{\OtherTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{#1}}
\newcommand{\PreprocessorTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textit{#1}}}
\newcommand{\RegionMarkerTok}[1]{#1}
\newcommand{\SpecialCharTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
\newcommand{\SpecialStringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
\newcommand{\StringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
\newcommand{\VariableTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
\newcommand{\VerbatimStringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
\newcommand{\WarningTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
\usepackage{longtable,booktabs}
\usepackage{graphicx,grffile}
\makeatletter
\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi}
\def\maxheight{\ifdim\Gin@nat@height>\textheight\textheight\else\Gin@nat@height\fi}
\makeatother
% Scale images if necessary, so that they will not overflow the page
% margins by default, and it is still possible to overwrite the defaults
% using explicit options in \includegraphics[width, height, ...]{}
\setkeys{Gin}{width=\maxwidth,height=\maxheight,keepaspectratio}
\IfFileExists{parskip.sty}{%
\usepackage{parskip}
}{% else
\setlength{\parindent}{0pt}
\setlength{\parskip}{6pt plus 2pt minus 1pt}
}
\setlength{\emergencystretch}{3em}  % prevent overfull lines
\providecommand{\tightlist}{%
  \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
\setcounter{secnumdepth}{5}
% Redefines (sub)paragraphs to behave more like sections
\ifx\paragraph\undefined\else
\let\oldparagraph\paragraph
\renewcommand{\paragraph}[1]{\oldparagraph{#1}\mbox{}}
\fi
\ifx\subparagraph\undefined\else
\let\oldsubparagraph\subparagraph
\renewcommand{\subparagraph}[1]{\oldsubparagraph{#1}\mbox{}}
\fi

%%% Use protect on footnotes to avoid problems with footnotes in titles
\let\rmarkdownfootnote\footnote%
\def\footnote{\protect\rmarkdownfootnote}

%%% Change title format to be more compact
\usepackage{titling}

% Create subtitle command for use in maketitle
\providecommand{\subtitle}[1]{
  \posttitle{
    \begin{center}\large#1\end{center}
    }
}

\setlength{\droptitle}{-2em}

  \title{Statistical Data Management}
    \pretitle{\vspace{\droptitle}\centering\huge}
  \posttitle{\par}
    \author{Authors}
    \preauthor{\centering\large\emph}
  \postauthor{\par}
      \predate{\centering\large\emph}
  \postdate{\par}
    \date{2019-06-19}

\usepackage{booktabs}
\usepackage{amsthm}
\makeatletter
\def\thm@space@setup{%
  \thm@preskip=8pt plus 2pt minus 4pt
  \thm@postskip=\thm@preskip
}
\makeatother

\begin{document}
\maketitle

{
\setcounter{tocdepth}{1}
\tableofcontents
}
\hypertarget{prerequisites}{%
\chapter{Prerequisites}\label{prerequisites}}

This is a \emph{sample} book written in \textbf{Markdown}. You can use anything that Pandoc's Markdown supports, e.g., a math equation \(a^2 + b^2 = c^2\).

The \textbf{bookdown} package can be installed from CRAN or Github:

\begin{Shaded}
\begin{Highlighting}[]
\KeywordTok{install.packages}\NormalTok{(}\StringTok{"bookdown"}\NormalTok{)}
\CommentTok{# or the development version}
\CommentTok{# devtools::install_github("rstudio/bookdown")}
\end{Highlighting}
\end{Shaded}

Remember each Rmd file contains one and only one chapter, and a chapter is defined by the first-level heading \texttt{\#}.

To compile this example to PDF, you need XeLaTeX. You are recommended to install TinyTeX (which includes XeLaTeX): \url{https://yihui.name/tinytex/}.

\hypertarget{whatis}{%
\chapter{What is Statistical Data Management?}\label{whatis}}

You can label chapter and section titles using \texttt{\{\#label\}} after them, e.g., we can reference Chapter \ref{intro}. If you do not manually label them, there will be automatic labels anyway, e.g., Chapter \ref{methods}.

Figures and tables with captions will be placed in \texttt{figure} and \texttt{table} environments, respectively.

\begin{Shaded}
\begin{Highlighting}[]
\KeywordTok{par}\NormalTok{(}\DataTypeTok{mar =} \KeywordTok{c}\NormalTok{(}\DecValTok{4}\NormalTok{, }\DecValTok{4}\NormalTok{, }\FloatTok{.1}\NormalTok{, }\FloatTok{.1}\NormalTok{))}
\KeywordTok{plot}\NormalTok{(pressure, }\DataTypeTok{type =} \StringTok{'b'}\NormalTok{, }\DataTypeTok{pch =} \DecValTok{19}\NormalTok{)}
\end{Highlighting}
\end{Shaded}

\begin{figure}

{\centering \includegraphics[width=0.8\linewidth]{bookdown-demo_files/figure-latex/nice-fig-1} 

}

\caption{Here is a nice figure!}\label{fig:nice-fig}
\end{figure}

Reference a figure by its code chunk label with the \texttt{fig:} prefix, e.g., see Figure \ref{fig:nice-fig}. Similarly, you can reference tables generated from \texttt{knitr::kable()}, e.g., see Table \ref{tab:nice-tab}.

\begin{Shaded}
\begin{Highlighting}[]
\NormalTok{knitr}\OperatorTok{::}\KeywordTok{kable}\NormalTok{(}
  \KeywordTok{head}\NormalTok{(iris, }\DecValTok{20}\NormalTok{), }\DataTypeTok{caption =} \StringTok{'Here is a nice table!'}\NormalTok{,}
  \DataTypeTok{booktabs =} \OtherTok{TRUE}
\NormalTok{)}
\end{Highlighting}
\end{Shaded}

\begin{table}[t]

\caption{\label{tab:nice-tab}Here is a nice table!}
\centering
\begin{tabular}{rrrrl}
\toprule
Sepal.Length & Sepal.Width & Petal.Length & Petal.Width & Species\\
\midrule
5.1 & 3.5 & 1.4 & 0.2 & setosa\\
4.9 & 3.0 & 1.4 & 0.2 & setosa\\
4.7 & 3.2 & 1.3 & 0.2 & setosa\\
4.6 & 3.1 & 1.5 & 0.2 & setosa\\
5.0 & 3.6 & 1.4 & 0.2 & setosa\\
\addlinespace
5.4 & 3.9 & 1.7 & 0.4 & setosa\\
4.6 & 3.4 & 1.4 & 0.3 & setosa\\
5.0 & 3.4 & 1.5 & 0.2 & setosa\\
4.4 & 2.9 & 1.4 & 0.2 & setosa\\
4.9 & 3.1 & 1.5 & 0.1 & setosa\\
\addlinespace
5.4 & 3.7 & 1.5 & 0.2 & setosa\\
4.8 & 3.4 & 1.6 & 0.2 & setosa\\
4.8 & 3.0 & 1.4 & 0.1 & setosa\\
4.3 & 3.0 & 1.1 & 0.1 & setosa\\
5.8 & 4.0 & 1.2 & 0.2 & setosa\\
\addlinespace
5.7 & 4.4 & 1.5 & 0.4 & setosa\\
5.4 & 3.9 & 1.3 & 0.4 & setosa\\
5.1 & 3.5 & 1.4 & 0.3 & setosa\\
5.7 & 3.8 & 1.7 & 0.3 & setosa\\
5.1 & 3.8 & 1.5 & 0.3 & setosa\\
\bottomrule
\end{tabular}
\end{table}

You can write citations, too. For example, we are using the \textbf{bookdown} package \citep{R-bookdown} in this sample book, which was built on top of R Markdown and \textbf{knitr} \citep{xie2015}.

\hypertarget{access}{%
\chapter{Accessing Data}\label{access}}

Here we discuss what it means to access data. The hope is that we cover more than just one single software for these chapters - SAS, R, \& Python.

Using R and SAS is understood even within a single RStudio project. We need to look into this for Python.

\hypertarget{cleaning}{%
\chapter{Cleaning Data}\label{cleaning}}

We describe our methods in this chapter.

\hypertarget{combining-data}{%
\chapter{Combining Data}\label{combining-data}}

Some \emph{significant} applications are demonstrated in this chapter.

\hypertarget{example-one}{%
\section{Example one}\label{example-one}}

\hypertarget{example-two}{%
\section{Example two}\label{example-two}}

\hypertarget{consolidating-observations}{%
\chapter{Consolidating Observations}\label{consolidating-observations}}

We have finished a nice book.

\hypertarget{accumulating-variables}{%
\chapter{Accumulating Variables}\label{accumulating-variables}}

We have finished a nice book.

\hypertarget{loops-and-iterative-execution}{%
\chapter{Loops and Iterative Execution}\label{loops-and-iterative-execution}}

We have finished a nice book.

\hypertarget{structured-query-language-sql}{%
\chapter{Structured Query Language (SQL)}\label{structured-query-language-sql}}

We have finished a nice book.

\hypertarget{working-with-text-data}{%
\chapter{Working with Text Data}\label{working-with-text-data}}

We have finished a nice book.

\hypertarget{working-with-longitudinal-data}{%
\chapter{Working with Longitudinal Data}\label{working-with-longitudinal-data}}

We have finished a nice book.

\hypertarget{data-imputation}{%
\chapter{Data Imputation}\label{data-imputation}}

We have finished a nice book.

\hypertarget{case-studies}{%
\chapter{Case Studies}\label{case-studies}}

We have finished a nice book.

\hypertarget{research-topics}{%
\chapter{Research Topics}\label{research-topics}}

Here we highlihgt a few research areas that center on data management as it relates to privacy. In the current moment of the Internet, openness, and government, personal privacy is a hot topic. Data mangement plays a critical role in personal privacy as the data wranglers and managers share responsibility to protect personal identifying information from being exposed or leaked. There are competing ideas of how to best retain privacy while sharing public data sets, namely differential privacy and \ldots{}

\bibliography{book.bib,packages.bib}


\end{document}