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fixed.xml
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fixed.xml
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<ROSETTASCRIPTS>
<TASKOPERATIONS>
</TASKOPERATIONS>
<SCOREFXNS>
<ScoreFunction name="stage1" weights="/sfs/lustre/bahamut/scratch/jws6pq/CMfiles/stage1.wts" symmetric="1">
<Reweight scoretype="atom_pair_constraint" weight="1"/>
</ScoreFunction>
<ScoreFunction name="stage2" weights="/sfs/lustre/bahamut/scratch/jws6pq/CMfiles/stage2.wts" symmetric="1">
<Reweight scoretype="atom_pair_constraint" weight="0.5"/>
</ScoreFunction>
<ScoreFunction name="fullatom" weights="/sfs/lustre/bahamut/scratch/jws6pq/CMfiles/stage3.wts" symmetric="1">
<Reweight scoretype="atom_pair_constraint" weight="0.5"/>
</ScoreFunction>
</SCOREFXNS>
<FILTERS>
</FILTERS>
<MOVERS>
<Hybridize name="hybridize" stage1_scorefxn="stage1" stage2_scorefxn="stage2" fa_scorefxn="fullatom" batch="1" stage1_increase_cycles="1.0" stage2_increase_cycles="1.0" linmin_only="1">
<Fragments three_mers="MERSfrags.200.3mers" nine_mers="MERSfrags.200.9mers"/>
<Template pdb="MERSonSARS2.pdb" cst_file="AUTO" weight="1.000" symmdef="/sfs/lustre/bahamut/scratch/jws6pq/CMfiles/SARS2.symm"/>
<Template pdb="MERSonSARS.pdb" cst_file="AUTO" weight="1.000" symmdef="/sfs/lustre/bahamut/scratch/jws6pq/CMfiles/SARS.symm"/>
<Template pdb="MERSonMERS.pdb" cst_file="AUTO" weight="1.000" symmdef="/sfs/lustre/bahamut/scratch/jws6pq/CMfiles/MERS.symm"/>
</Hybridize>
</MOVERS>
<APPLY_TO_POSE>
</APPLY_TO_POSE>
<PROTOCOLS>
<Add mover="hybridize"/>
</PROTOCOLS>
</ROSETTASCRIPTS>
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