libsbml

[a-kramer]

Hi,
I am trying to punch-up an R script that uses libsbml to run. As I understand it, libsbml must be installed in the system (via apt or whatever) and then I also need the R bindings, which according to official guides have to be installed using R CMD, e.g.

R CMD INSTALL libSBML_5.18.0.tar.gz

How do I make that happen in the Docker image?
I guess, maybe the apt command from an earlier issue would help:

write_apt(apt_input = "libsbml5 libsbml5-dev")

But, since there is no official libsbml5-R package, the R bindings will be tricky to get, right? Do you have any advice?

[a-kramer]

update: I have tried a couple of things... But, whatever I do, even if I remove almost all dependencies (apt.txt, postBuild, any mention of libSBML anywhere), I cannot launch binder. Every time I get:

Launching server...
Launch attempt 1 failed, retrying...
Launch attempt 2 failed, retrying...
Launch attempt 3 failed, retrying...
Internal Server Error

So, I don't know how to debug this.... the holepunch test repository does work for me and I don't see any difference to mine, except for the dates and versions of R involved.