Pyodide kernel : status unknown with Edge #87

guiguichau · 2023-09-29T14:24:40Z

Description

Hi guys. Any help would be apreciated. Thanks in advance

I open : https://jupyter.org/try-jupyter/lab/?path=notebooks%2FIntro.ipynb
The Pydodide kernel stays in unknown status even after restarting the kernel. (The SQL Lite kernel is working)
I deleted cookies, cache... with no success
I also tried in a InPrivate window.

Reproduce

Expected behavior

Context

JupyterLite version: 0.1.2
Operating System and version: Windows 10 Pro
Browser and version: Edge Version 117.0.2045.43 (Version officielle) (64 bits)

Browser Output

Output from your browser Javascript console here.


manifest.webmanifest:1

Manifest: property 'url' ignored, should be within scope of the manifest.

manifest.webmanifest:1

Manifest: property 'url' of 'shortcut' not present.

manifest.webmanifest:1

Manifest: property 'url' ignored, should be within scope of the manifest.

manifest.webmanifest:1

Manifest: property 'url' of 'shortcut' not present.

remoteEntry.a37e37c….js:1

Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^2.0.1)

remoteEntry.a37e37c….js:1

Unsatisfied version 1.10.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/messaging (required ^2.0.0)

remoteEntry.a37e37c….js:1

Unsatisfied version 1.12.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/coreutils (required ^2.0.0)

remoteEntry.a37e37c….js:1

Unsatisfied version 1.11.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/signaling (required ^2.0.0)

remoteEntry.a37e37c….js:1

Unsatisfied version 1.9.2 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/algorithm (required ^2.0.0)

remoteEntry.a37e37c….js:1

Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/translation (required ^4.0.5)

remoteEntry.a37e37c….js:1

Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/settingregistry (required ^4.0.5)

remoteEntry.a37e37c….js:1

Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/notebook (required ^4.0.5)

remoteEntry.a37e37c….js:1

Unsatisfied version 6.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/services (required ^7.0.5)

remoteEntry.a37e37c….js:1

Unsatisfied version 1.8.2 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/properties (required ^2.0.0)

remoteEntry.a37e37c….js:1

No satisfying version (^4.0.5) of shared module @jupyterlab/outputarea found in shared scope default.

Available versions: 3.5.3 from _JUPYTERLAB.CORE_OUTPUT

remoteEntry.a37e37c….js:1

Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/logconsole (required ^4.0.5)

remoteEntry.a37e37c….js:1

Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/rendermime (required ^4.0.5)

remoteEntry.a37e37c….js:1

Unsatisfied version 1.10.4 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/disposable (required ^2.0.0)

remoteEntry.a37e37c….js:1

Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/mainmenu (required ^4.0.5)

remoteEntry.b15a25c….js:1

Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^2.0.1)

remoteEntry.6a76d3e….js:1

Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/apputils (required ^4.0.0)

remoteEntry.6a76d3e….js:1

Unsatisfied version 1.9.2 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/algorithm (required ^2.0.0)

remoteEntry.6a76d3e….js:1

Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^2.0.1)

remoteEntry.6a76d3e….js:1

Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/ui-components (required ^4.0.0)

remoteEntry.ade7222….js:1

Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^1.37.2)

remoteEntry.edc72ee….js:1

Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^1.37.2)

remoteEntry.74a3757….js:1

Unsatisfied version 5.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/coreutils (required ^5.6.3)

remoteEntry.74a3757….js:1

Unsatisfied version 3.5.3 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @jupyterlab/application (required ^3.6.3)

remoteEntry.d50eb71….js:1

Unsatisfied version 1.37.1 from _JUPYTERLAB.CORE_OUTPUT of shared singleton module @lumino/widgets (required ^1.37.2)

service-manager.ts:50 Registering new JupyterLite ServiceWorker https://jupyter.org/try-jupyter/service-worker-f7de73d.js

service-manager.ts:52 JupyterLite ServiceWorker was sucessfully registered

index.ts:235 Kernel filesystem and JupyterLite contents will be synced

index.js:51 Pyodide contents will be synced with Jupyter Contents

pyodide.asm.js:9 Loading micropip, packaging

pyodide.asm.js:9 Loaded packaging, micropip

pyodide.asm.js:9 Loading sqlite3

pyodide.asm.js:9 Loaded sqlite3

336.ebc7a55ea1768712…7a55ea1768712771f:1

Failed to fetch ipywidgets through the "jupyter.widget.control" comm channel, fallback to fetching individual model state. Reason: Control comm did not respond in time

kernel.js:40

Uncaught (in promise) PythonError: Traceback (most recent call last):

File "/lib/python311.zip/_pyodide/_base.py", line 571, in eval_code_async

await CodeRunner(

File "/lib/python311.zip/_pyodide/_base.py", line 396, in run_async

await coroutine

File "", line 4, in 

File "/lib/python3.11/site-packages/piplite/piplite.py", line 116, in _install

return await micropip.install(

^^^^^^^^^^^^^^^^^^^^^^^

File "/lib/python3.11/site-packages/micropip/_commands/install.py", line 138, in install

await transaction.gather_requirements(requirements)

File "/lib/python3.11/site-packages/micropip/transaction.py", line 197, in gather_requirements

await asyncio.gather(*requirement_promises)

File "/lib/python3.11/site-packages/micropip/transaction.py", line 204, in add_requirement

return await self.add_requirement_inner(Requirement(req))

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

File "/lib/python3.11/site-packages/micropip/transaction.py", line 319, in add_requirement_inner

await self.add_wheel(wheel, req.extras, specifier=str(req.specifier))

File "/lib/python3.11/site-packages/micropip/transaction.py", line 355, in add_wheel

await wheel.download(self.fetch_kwargs)

File "/lib/python3.11/site-packages/micropip/transaction.py", line 98, in download

data = await self._fetch_bytes(fetch_kwargs)

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

File "/lib/python3.11/site-packages/micropip/transaction.py", line 88, in _fetch_bytes

raise e

File "/lib/python3.11/site-packages/micropip/transaction.py", line 82, in _fetch_bytes

return await fetch_bytes(self.url, fetch_kwargs)

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

File "/lib/python3.11/site-packages/micropip/_compat_in_pyodide.py", line 30, in fetch_bytes

result_bytes = await (await pyfetch(url, **kwargs)).bytes()

^^^^^^^^^^^^^^^^^^^^^^^^^^^^

File "/lib/python311.zip/pyodide/http.py", line 308, in pyfetch

raise OSError(e.message) from None

OSError: Failed to fetch
at new_error (cdn.jsdelivr.net/pyo…dide.asm.js:9:12519)
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at _PyCFunctionWithKeywords_TrampolineCall (cdn.jsdelivr.net/pyo…ide.asm.js:9:123040)
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at cdn.jsdelivr.net/pyo…ll/pyodide.asm.wasm
at Module.callPyObjectKwargs (cdn.jsdelivr.net/pyo…dide.asm.js:9:81732)
at Module.callPyObject (cdn.jsdelivr.net/pyo…dide.asm.js:9:82066)
at wrapper (cdn.jsdelivr.net/pyo…dide.asm.js:9:58562)

The text was updated successfully, but these errors were encountered:

jtpio · 2023-10-02T07:47:20Z

@guiguichau would you be able to try again? This JupyterLite was updated to the latest packages so maybe that would fix your issue?

Looking fine when testing in a Firefox private window:

guiguichau · 2023-10-02T09:52:35Z

Hi @jtpio
Thanks a lot for your reply. It still does not work even in a private window (I can only use Edge).
Have a nice day.

savakarrohan · 2023-10-02T12:33:05Z

On an Edge private window, I do get a problem with the jupyterlite environment,

I have a question regarding whether the dependencies for the alpha versions of pyodide kernel are correct?

Error

comlink.mjs:51  Uncaught (in promise) PythonError: Traceback (most recent call last):
  File "/lib/python311.zip/_pyodide/_base.py", line 571, in eval_code_async
    await CodeRunner(
  File "/lib/python311.zip/_pyodide/_base.py", line 394, in run_async
    coroutine = eval(self.code, globals, locals)
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<exec>", line 3, in <module>
OSError: [Errno 28] Invalid argument: 'notebooks'

    at new_error (pyodide.asm.js:9:12519)
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at _PyCFunctionWithKeywords_TrampolineCall (pyodide.asm.js:9:123052)
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at pyodide.asm.wasm
    at Module.callPyObjectKwargs (pyodide.asm.js:9:81732)
    at Module.callPyObject (pyodide.asm.js:9:82066)
    at wrapper (pyodide.asm.js:9:58562)
deserialize @ comlink.mjs:51
T @ comlink.mjs:317

psychemedia · 2024-03-15T11:51:17Z

I have repeated problems with pyodide kernel in Chrome, particularly status unknown, and then if I try to restart the kernel, unknown kernel (changing out to another kernel and back again does not necessarily resolve the pyodide status unkown report).

I'm not sure how to try to generate or find potentially log/debug messages?

psychemedia · 2024-03-15T11:54:44Z

Fiddling with this a bit more, I can recreate one instance of the issue by:

opening a new pyodide notebook in Jupyterlite (lab);
from the Notebook-> link, open the notebook in Notebook. The Pyodide kernel typically shows status unknown.

guiguichau added the bug Something isn't working label Sep 29, 2023

jtpio transferred this issue from jupyterlite/jupyterlite Feb 14, 2024

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Pyodide kernel : status unknown with Edge #87

Pyodide kernel : status unknown with Edge #87

guiguichau commented Sep 29, 2023

jtpio commented Oct 2, 2023

guiguichau commented Oct 2, 2023

savakarrohan commented Oct 2, 2023 •

edited

psychemedia commented Mar 15, 2024

psychemedia commented Mar 15, 2024

Pyodide kernel : status unknown with Edge #87

Pyodide kernel : status unknown with Edge #87

Comments

guiguichau commented Sep 29, 2023

Description

Reproduce

Expected behavior

Context

jtpio commented Oct 2, 2023

guiguichau commented Oct 2, 2023

savakarrohan commented Oct 2, 2023 • edited

Error

psychemedia commented Mar 15, 2024

psychemedia commented Mar 15, 2024

savakarrohan commented Oct 2, 2023 •

edited