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error when pip install multiPrime==2.4.7 #6

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wangzhichao1990 opened this issue Nov 7, 2023 · 3 comments
Open

error when pip install multiPrime==2.4.7 #6

wangzhichao1990 opened this issue Nov 7, 2023 · 3 comments

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@wangzhichao1990
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Hi,
When I installed this package, an error occurred.
image
Python and operating system information are shown in the following figure:
image
Do you have any suggestions? thanks.

@joybio
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joybio commented Nov 7, 2023

PyPI package support is currently unavailable due to a major update. I will address this issue in the near future. Meanwhile, you can install multiPrime using the following Conda command, which contains a complete pipeline:

conda create -n multiPrime -c bioconda -c conda-forge --file requirement2.txt

The PyPI package for multiPrime only includes the core primer design module. If you're interested, you can access our web-based version of multiPrime at this URL: http://www.multiprime.cn. While it's currently a work in progress, it is already functional and can effectively design primers.

Alternatively, you can download our GUI-based multiPrime2 for use on Windows systems from this GitHub repository: https://github.com/joybio/multiPrime2-GUI.

Furthermore, both the web-based and GUI-based versions not only encompass the multiPrime primer design module but also house an enhanced version, multiPrime2, which is presently in the testing phase.

@wangzhichao1990
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The pipeline works well. Thank you very much for your development work.
By the way, I have some candidate primers for each pathogen. Is it possible to use the filtering algorithm in the package to find the optimal primer pool?

@joybio
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joybio commented Nov 7, 2023

Certainly! You can locate the command line within the "multiPrime.py" file, just ensure that your input file is correctly specified.

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