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Annotated output file or supply a genome-annotated file? #183

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bananabenana opened this issue May 31, 2023 · 1 comment
Open

Annotated output file or supply a genome-annotated file? #183

bananabenana opened this issue May 31, 2023 · 1 comment

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@bananabenana
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bananabenana commented May 31, 2023

Hi,

I have successfully run gapseq, but was wondering if there is a way to output an annotated genbank file with the identified genes used in the model? Or even a multifasta?

Or is it possible to supply a genome-annotated file as input so the same locus tags can be kept?

Thanks

@bananabenana bananabenana changed the title Annotated output file? Annotated output file or supply a genome-annotated file? May 31, 2023
@jotech
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jotech commented Jun 20, 2023

hi @bananabenana
although this sounds interesting we do not see gapseq as an annotation software in the first place. nonetheless, it's a nice use case. I labeled it as a feature request!

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