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141 followers · 10 following

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault ContributorAchievement: Starstruck
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Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault ContributorAchievement: Starstruck
BetaSend feedback

Highlights

  • Pro

Organizations

@mrc-ide @bacpop
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Pinned

  1. bacpop/PopPUNK bacpop/PopPUNK Public

    PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

    Python 79 16

  2. bacpop/pp-sketchlib bacpop/pp-sketchlib Public

    Library of sketching functions used by PopPUNK

    C++ 29 6

  3. bacpop/mandrake bacpop/mandrake Public

    Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

    Python 35 2

  4. bacpop/ska.rust bacpop/ska.rust Public

    Split k-mer analysis – version 2

    Rust 54 4

  5. mgalardini/pyseer mgalardini/pyseer Public

    SEER, reimplemented in python 🐍🔮

    Python 96 24

  6. bacpop/unitig-caller bacpop/unitig-caller Public

    Methods to determine sequence element (unitig) presence/absence

    Python 17 3