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RsetupforBootcamp.html
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RsetupforBootcamp.html
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<?xml version="1.0" encoding="utf-8" ?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta http-equiv="Content-Style-Type" content="text/css" />
<meta name="generator" content="pandoc" />
<meta name="author" content="DPI R Bootcamp Dec. 3rd to 5th, 2012" />
<title>Setting Up R</title>
<style type="text/css">
table.sourceCode, tr.sourceCode, td.lineNumbers, td.sourceCode {
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table.sourceCode { width: 100%; }
td.lineNumbers { text-align: right; padding-right: 4px; padding-left: 4px; color: #aaaaaa; border-right: 1px solid #aaaaaa; }
td.sourceCode { padding-left: 5px; }
code > span.kw { color: #007020; font-weight: bold; }
code > span.dt { color: #902000; }
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code > span.bn { color: #40a070; }
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code > span.ch { color: #4070a0; }
code > span.st { color: #4070a0; }
code > span.co { color: #60a0b0; font-style: italic; }
code > span.ot { color: #007020; }
code > span.al { color: #ff0000; font-weight: bold; }
code > span.fu { color: #06287e; }
code > span.er { color: #ff0000; font-weight: bold; }
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</head>
<body>
<div class="slide titlepage">
<h1 class="title">Setting Up R</h1>
<p class="author">
DPI R Bootcamp Dec. 3rd to 5th, 2012
</p>
<p class="date">Jared Knowles</p>
</div>
<div class="section slide level1" id="getting-ready-for-the-dpi-r-bootcamp">
<h1>Getting Ready for the DPI R Bootcamp</h1>
<ul>
<li>How to get up and running with R in no time!</li>
</ul>
<p align="center">
<img src="data:image/png;base64,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" height="81" width="138">
</p>
</div>
<div class="section slide level1" id="materials">
<h1>Materials</h1>
<ul>
<li><a href="http://cran.r-project.org/">Download R</a></li>
<li><a href="http://www.rstudio.org/">RStudio</a></li>
<li>We'll also want to install a few basic packages. This can be done on the fly later, but a few include <code>ggplot2</code>;<code>knitr</code>;<code>plyr</code></li>
</ul>
</div>
<div class="section slide level1" id="step-1-install-r">
<h1>Step 1: Install R</h1>
<ul>
<li>Simply run the installer. If you have a 64-bit machine, choose 64 bit R, if you don't know, just choose the default</li>
<li>The install should be less than 100mb</li>
<li>There is a short video on the next slide for help installing on Windows machines</li>
</ul>
</div>
<div class="section slide level1" id="installing-r-on-windows">
<h1>Installing R on Windows</h1>
<p align="center"><iframe src="http://www.screenr.com/embed/kzT8" width="650" height="396" frameborder="0"></iframe></p>
</div>
<div class="section slide level1" id="installing-r-on-a-mac">
<h1>Installing R on a Mac</h1>
<ul>
<li>Get the install file from <a href="http://cran.r-project.org/bin/macosx/">CRAN</a></li>
<li>Get <a href="http://www.rstudio.org/">RStudio</a></li>
<li>Run the R installer, and then run the RStudio installer</li>
</ul>
</div>
<div class="section slide level1" id="installing-r-on-ubuntu-or-debian-linux">
<h1>Installing R on Ubuntu or Debian Linux</h1>
<ul>
<li>Read the <a href="http://cran.r-project.org/bin/linux/ubuntu/README">install notes online</a></li>
<li>Get <a href="http://www.rstudio.org/">RStudio</a></li>
<li>Run the R installer, and then run the RStudio installer</li>
</ul>
</div>
<div class="section slide level1" id="step-2-rstudio">
<h1>Step 2: RStudio</h1>
<ul>
<li>Now run the RStudio installer</li>
<li>RStudio will automatically find your R installation</li>
</ul>
</div>
<div class="section slide level1" id="step-3-install-packages">
<h1>Step 3: Install packages</h1>
<p>First, watch this tutorial<br></p>
<p align="center"><iframe src="http://www.screenr.com/embed/Fps8" width="650" height="396" frameborder="0"></iframe></p>
</div>
<div class="section slide level1" id="install-packages">
<h1>Install Packages</h1>
<ul>
<li>Are you running RStudio in administrator mode on Windows Vista or Windows 7?</li>
<li>If not, you need to be to install packages (in most cases)</li>
<li>When you launch RStudio, right click on the icon for RStudio and then click "Run as Administrator"</li>
<li>If you are on a Mac or Windows XP you can disregard this</li>
</ul>
</div>
<div class="section slide level1" id="install-packages-2">
<h1>Install Packages (2)</h1>
<ul>
<li>Now, copy and paste the code below into the bottom left window in RStudio (the R terminal):</li>
</ul>
<pre class="sourceCode r"><code class="sourceCode r">install_new<-function(mypkg){
if (mypkg %in% <span class="kw">installed.packages</span>()) <span class="kw">cat</span>(<span class="st">"Package already installed"</span>)
else{<span class="kw">cat</span>(<span class="st">"Package not found, so installing with dependencies...</span><span class="ch">\n</span><span class="st"> </span>
<span class="st"> Press CTRL C to abort."</span>)
<span class="kw">Sys.sleep</span>(<span class="dv">5</span>)
<span class="kw">install.packages</span>(mypkg,<span class="dt">repos=</span><span class="st">"http://cran.wustl.edu/"</span>)
}
}
<span class="kw">install_new</span>(<span class="st">'plyr'</span>)
<span class="kw">install_new</span>(<span class="st">'lmtest'</span>)
<span class="kw">install_new</span>(<span class="st">'ggplot2'</span>)
<span class="kw">install_new</span>(<span class="st">'gridExtra'</span>)
<span class="kw">install_new</span>(<span class="st">'eeptools'</span>)
<span class="kw">install_new</span>(<span class="st">'stringr'</span>)
<span class="kw">install_new</span>(<span class="st">'knitr'</span>)
<span class="kw">install_new</span>(<span class="st">'quantreg'</span>)
<span class="kw">install_new</span>(<span class="st">'xtable'</span>)
<span class="kw">install_new</span>(<span class="st">'lme4'</span>)
<span class="kw">install_new</span>(<span class="st">'caret'</span>)</code></pre>
</div>
<div class="section slide level1" id="alternate-install">
<h1>Alternate Install</h1>
<ul>
<li>If you want or if you have troubles with the above, you can overwrite any existing versions of those packages and do the install in one line, shown below:</li>
</ul>
<pre class="sourceCode r"><code class="sourceCode r"><span class="kw">install.packages</span>(<span class="kw">c</span>(<span class="st">'plyr'</span>,<span class="st">'lmtest'</span>,<span class="st">'ggplot2'</span>,<span class="st">'gridExtra'</span>,<span class="st">'stringr'</span>,
<span class="st">'knitr'</span>,<span class="st">'quantreg'</span>,<span class="st">'xtable'</span>,<span class="st">'lme4'</span>,<span class="st">'eeptools'</span>,<span class="st">'caret'</span>),
<span class="dt">repos=</span><span class="st">"http://cran.wustl.edu/"</span>)</code></pre>
</div>
<div class="section slide level1" id="run-rstudio">
<h1>Run RStudio</h1>
<ul>
<li>You should be able to run RStudio now and load any of the packages above.</li>
<li>Run the code below in the RStudio terminal panel (bottom left) to test this:</li>
</ul>
<pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(lmtest)
<span class="kw">example</span>(gqtest)</code></pre>
</div>
<div class="section slide level1" id="and-you-should-see...">
<h1>And you should see...</h1>
<pre><code>## Loading required package: zoo</code></pre>
<pre><code>## Attaching package: 'zoo'</code></pre>
<pre><code>## The following object(s) are masked from 'package:base':
##
## as.Date, as.Date.numeric</code></pre>
<pre><code>##
## gqtest> ## generate a regressor
## gqtest> x <- rep(c(-1,1), 50)
##
## gqtest> ## generate heteroskedastic and homoskedastic disturbances
## gqtest> err1 <- c(rnorm(50, sd=1), rnorm(50, sd=2))
##
## gqtest> err2 <- rnorm(100)
##
## gqtest> ## generate a linear relationship
## gqtest> y1 <- 1 + x + err1
##
## gqtest> y2 <- 1 + x + err2
##
## gqtest> ## perform Goldfeld-Quandt test
## gqtest> gqtest(y1 ~ x)
##
## Goldfeld-Quandt test
##
## data: y1 ~ x
## GQ = 2.937, df1 = 48, df2 = 48, p-value = 0.0001425
##
##
## gqtest> gqtest(y2 ~ x)
##
## Goldfeld-Quandt test
##
## data: y2 ~ x
## GQ = 1.389, df1 = 48, df2 = 48, p-value = 0.1293</code></pre>
</div>
<div class="section slide level1" id="and-test-the-graphics...">
<h1>And test the graphics...</h1>
<p>Type in in the terminal (or copy and paste)</p>
<pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(ggplot2)
y <- <span class="kw">rt</span>(<span class="dv">200</span>, <span class="dt">df =</span> <span class="dv">5</span>)
<span class="kw">qplot</span>(<span class="dt">sample =</span> y, <span class="dt">stat =</span> <span class="st">"qq"</span>)</code></pre>
</div>
<div class="section slide level1" id="results">
<h1>Results</h1>
<pre class="sourceCode r"><code class="sourceCode r">
<span class="kw">library</span>(ggplot2)
y <- <span class="kw">rt</span>(<span class="dv">200</span>, <span class="dt">df =</span> <span class="dv">5</span>)
<span class="kw">qplot</span>(<span class="dt">sample =</span> y, <span class="dt">stat =</span> <span class="st">"qq"</span>)</code></pre>
<div class="figure">
<img src="data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAogAAAGwCAMAAAAdVmTVAAAAqFBMVEUAAAAAADoAAGYAOmYAOpAAZrY6AAA6ADo6AGY6OmY6OpA6kNtmAABmADpmAGZmOgBmZgBmtv9/f39/f5V/f6t/lcF/q9aQOgCQOjqQ2/+VlcGVweurf6ur1v+2ZgC225C2///BlX/BlavBwdbB6//Wq3/W///bkDrb/7bb///l5eXrwZXr1qvr///y8vL/tmb/1qv/25D/68H//7b//9b//9v//+v////UCZ93AAAACXBIWXMAAAsSAAALEgHS3X78AAARhUlEQVR4nO2dC3vTVhZF1Q7tMIW2gztAKaUDnRpKUkJSIP7//2wkPxQ71uvKOtf76Kz9pSWk6do61wvJkuVQrAgRSHHuDSCkCiISiSAikQgiEokgIpEIIhKJICKRCCISiSAikQgiEokgIpEIIhKJICKRyGARL7apPxmYq8TvV+O7H0CVj4hiBVH5iChWEJWPiGIFUfmIKFYQlY+IYgVR+YgoVhCVj4hiBVH5iChWEJWPiGIFUfmIKFYQlY+IYgVR+YgoVhCVj4hiBVH5iChWEJWPiGIFc+YXRTsfEcUKZswvigYTEXEc3/0AiNi7nY1R47sfgENz/3Y2RY3vfgBVPiKKFUTlI6JYQVQ+IooVROUjolhBVD4iihVE5SOiWEFUPiKKFUTlI6JYQVQ+IooVROUjolhBVD4iihVE5SOiWEFUfpqIly8R0bggKj9JxOsFInofQJWfIuLfv/y1FnFRpnvPSchp6RLx869vr9kjeh9AlZ8g4mW1J9yZmHs7VfjuB1DlJ4hYhj2i+wFU+YgoVhCVnybiXXJvpwrf/QCqfEQUK4jKR0Sxgqh8RBQriMpHRLGCqHxEFCuIykdEsYKofEQUK4jKR0Sxgqh8RBQriMpHRLGCqHxEFCuIykdEsYKofEQUK4jKR0Sxgqh8RBQriMpHRLGCqHxEFCuIykdEsYKofEQUK4jKR0Sxgqh8RBQriMpHRLGCqHxEFCvwyt/9PXuImIfvfgAjfv03jyJiHr77ARDx4qTtVOG7H4BD82nbqcJ3P4AqHxHFCqLyEVGsICofEcUKovIRUawgKh8RxQqi8hFRrCAqHxHFCnzwd1cNp+MjoliBC379Osp0fEQUK3DBFxLxapv6E6N457sfoJlfFFPz2SOKFUTlI6JYQVQ+IooVROUjolhBVD4iihVE5SOiWEFUPiKKFUTlI6JYQVQ+IooVyPLbX16ehI+IYgWq/I5X9SbhI6JYgSofEbX47gfg0Hzadqrw3Q+gykdEsYKofEQUKxDjDzwgj+Yj4ki++wHS+ENPUcbyEXEs3/0AA/lb/xBRle9+gD7+RrxaQA7Nonz3A7Tz185tDbzbE3Kyosl3P0Arf+PezsB6T4iImnz3A/SIeHQsRkRNvvsBmvj3doKT87uCiOP47gdo4HeeGiOiJt/9AIh42naq8N0P0H5otuN3BRHH8d0PoMpHRLGCqHxEFCuIykdEsYKofEQUK4jKR0Sxgqh8RBQriMpHRLGCqHxEFCvIzO+93xARNfnuB7jj79/1ZcEfFkQcx3c/QM1fO4iIqdupwnc/wKGIHJpTt1OF736Aw0OzJX9YEHEc3/0AqnxEFCuIyk8Q8fbNYvH0AyLaFkTlJ4h4/Wy1Wr5CRNuCqPwEEatcViIuyvR8HyEnpUfEaqe4Se4/MCp89wNcXQy6anMCPy2j9ojL2kNEtCow5xfbWPETv3/Uycqru9/k3k4VvvsBZiDisnpu+BIRbQts+UUxi0PzXnJvpwrf8wBJe8IR/HUQMQ/f8QBph+R0/iaImIfvdYDtnTbVodmEXwcR8/CdDrC958uMfxdEzMN3OcD+MVl1+xFRrMCAf/DcUHX7EVGsYHL+vVMU1e1HRLGCqfn3T5VVtx8RxQqm5R9fsVHdfkQUK5iQ3/hinur2I6JYwXT85gvYqtuPiGIFU4tox28OIubhexqg8eU81e1HRLGCqHxEFCuYit92d4Pq9iOiWMFE/Nb7bFS3HxHFCqbht9/wpbr9iChWcDK/aLx8OB2/J4iYh686QH2/YY+HqtuPiInfLzpAcZRp+cODiHn4igMMt3AcPymImIcvOMBOvmFvSdHb/u2viKhVMFZEO35aEDEPX22AxLfLy20/Io7kiw2Q/g5Rre1HxLF8sQEQMfd2qvC1Bkj3UGv7LxBxLF9qgMpCtQVCxDx8qQEQERHNChL468Oy2gIhYh6+zgDbp4dqC4SIefgqA9SXD9UWCBHz8EUGuLuMrbZAiJiHLzLA3WUbtQVCxDx8iQH2rx6qLRAi5uErDFAgIiIqDICIe7napv7EKN75BgUbD+34h8nFZ48oVtDLv/fqstoCcWjOwz/7APdvc1BbIETMwz/3AEe326gtECLm4Z97gKPbvtQWCBHz8M89wNHth2oLhIh5+OcdoOE+WLUFQsQ8/LMO0HRDttoCIWIe/tkGaHvzvNoC2Yj45Xnx4M/vXyBivoJGfsfPcFBbIBMRvzx/dPPd+48P3iNitoIGfufPElFbIBMRP/3wuhSx/DciZis45nf/TBu1BTLcI75jj5ix4D6/70c5qC2Q2XPEomjyEBGtCvb5XXvCKfhDoiFie3Jvpwo/0wDFQabnDw8iavKzDDBcQ70FMhDx0+PtSnzNyUq+gqs0D+UWiD1iHr55QYKDo/iqDwAiahUkKDiKL/sAdIu4Pmv+BhEzFSTtCkfwq6g+AJ0ifnn+qPz3uyYTc2+nCt+uIPGQnMzfRvUB6BRx85oKr6xkKBhn4XB+HdUHoPvQvN4Zske0L7jT0PsC2ewR2y/g5N5OFb6tiGb8u6jyu/eI7cm9nSp8k4L9Y7L3BbIR8SMXtO0LDp8bel8gm0Nz4z2xiDhdwfE5ivcFMjxrRkSzgoZTZe8LZHTW/AgR7QoaL9l4XyAjEXmOaFbQcuHQ+wLxHDEPf6qC1svX3heI54h5+BMVtL+K4n2BeI6Yhz9NQcered4XyPKVFZ4jTlzQ9Zqy9wXilZU8/JML+u5t8L5AiJiHf2pB70023heIyzd5+CcW9N/s5X2BrC7ffPyG28AmKhh256v3BbK6fLP5QMTTCwbe+Op9gWzeKvDzi/Lj5iEinlgwbGc4np8QVX6niKvSwY9F0XQxMfd2qvBHFBQJGvpfoBxnzcvFT38gYuL3p2nof4EyiHj99EP5gYgpKVI9dL9ARpdvHrx/VxRPNr+5fLn6/Ovb8pNFma49J9mldvDcG+IuR5dvyo/dycrlq9Xt72+3/yn3HxgVflJBwo5wFL+K2gJZXb4p94m1iLs9IiIOSdIBeQR/G7UFsnpl5asXH3eHZp4jDi3Yf16oNoAqv1vEw3DWPKjg8PxEbQBVfoqI+8m9nSr8voKj02S1AVT5iDhlQcPVGrUBVPmIOFVByxVDtQFU+Yg4QUFRNOwKRxZ4XyBEzMNvKuh8+URtAFU+Ip5c0P0qntoAqnxEPK2g96VktQFU+Yh4SsGA+xnUBlDlI+LYgoH31agNoMpHxJEFwzTUG0CVj4hjCoZaOKLA+wIhYhZ+1xXDSQq8LxAiZuEna6g2gC4fEYemuJ+pCzbxu0Cn8RFxUMZJmFBQx+kCncxHxCHZU9DnAPp8RBySvV2hzwH0+YjYn4OjsccBPPARsTeHTwodDuCCj4g9uX924m4AJ3xE7M7RWbK3AbzwEbE1zRdrHA3gio+ILWm7aOhmAGd8RGxO67VrLwN44yNiY9pfQnEygDs+Ijal42U8HwP44yNiQ7peTnYxgEM+Ih6n87YGDwN45CPivfTdXiM/gFM+It5l0G1eygN45iPiLgNvN9QdwDcfEdcZftur6ADu+Yh4kfaz/yUHmAEfEYf8uIbTCpISlY+IaR4KDjAPfnAR0yQcUeB9gRAxCz9ZQ7UB5sMfK+LVNvUnRjHlbz20rPC9QBn5YfeIg0+TxxZs43aBMvOjirizMJUvM8Dc+BFFLHeC9d4QEUX48UQ8vHaNiCL8cCLee2qIiCL8mCJe1KcoiCjCDyfixeFpMiKK8OOJeBrf/QCq/Ggi3r9siIgi/EAiNl7ARkQRfhQR2244REQRfhARW298RUQRfjART+bLPpDe+UFEPDpJGcuXfSC986OIOBXf/QCqfEQUK4jKjyFi+02HiCjCn7uI9S1fE/FlH0jv/FmLOODtyogowp+ziEPeNo+IIvz5i9jxBHEEX/aB9M6fs4jdCo7jyz6Q3vmzFtGA734AVf58RRz2PlFEFOHPVMTB71hGRBH+PEUc/tZ5RBThz1lEC77sA+mdP08RBz5BHMGXfSC98+coYsqPs0FEEf7cRNy+tmzGl30gvfNnJmLyT/hCRBH+XESs3NvtDTk0O+TPRMR6T5j64w4RUYQ/BxH3f8wcL/E55c9AxHpPWP2DiE75cxHRkH8Y1QfSO38GIh48L0REp3znIh6dmyCiU75vEY8vGSKiUz4iJkb1gfTOTxDx9s1i8fSDjIhrBTk0z4WfIOL1s9Vq+UpFxJYX8hDRKT9BxCqXlYiLMj3fZ59KxHNvAzFLz2Nb7RQ3yf0H5iDNR+Xp+F1R3aN45w8VcbmoDsy1h2cVsev2GkR0yk/YI96+eXX3m9zbuR9EnCE/QcRl9dzwpYCIXbfYIKJTfoKIB8m9nSp89wOo8hFRrCAqHxHFCqLyfYnYf/81IjrlOxFxY+CAt0UholO+DxG3BiLifPmuROTQPF++DxGHvzkPEZ3yxUVMfXcoInrla4uY9EMbRvARUYaPiIlRfSC987VF5NAchi8uohzf/QCqfEQUK4jKR0Sxgqh8RBQriMpHRLGCqHxEFCuIykdEsYKofEQUK4jKR0Sxgqh8RBQriMpHRLGCqHxEFCuIykdEsYKofEkR9+65UVtn2QfSO19RxP27ENXWWfaB9M5XEXH/xkNEDMgXEfHwVmwOzfH4kiI2bOeJ/NYgoghfRMTW9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alt="plot of chunk unnamed-chunk-6" /><p class="caption">plot of chunk unnamed-chunk-6</p>
</div>
</div>
<div class="section slide level1" id="thats-all">
<h1>That's all</h1>
<ul>
<li>Did you see the output like the slides above?</li>
<li>Did you see the plot in the lower right?</li>
</ul>
</div>
<div class="section slide level1" id="optional">
<h1>Optional</h1>
<ul>
<li>If you want to see the cutting edge of R development--interactive web-based data applications, you can install the following beta software</li>
</ul>
<pre class="sourceCode r"><code class="sourceCode r"><span class="kw">options</span>(<span class="dt">repos =</span> <span class="kw">c</span>(<span class="dt">RStudio =</span> <span class="st">"http://rstudio.org/_packages"</span>, <span class="kw">getOption</span>(<span class="st">"repos"</span>)))
<span class="kw">install.packages</span>(<span class="st">"shiny"</span>)</code></pre>
</div>
<div class="section slide level1" id="optional-cont.">
<h1>Optional Cont.</h1>
<ul>
<li>To check if it worked (and it might not depending on your machine's configuration)</li>
</ul>
<pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(shiny)
<span class="kw">runExample</span>(<span class="st">"06_tabsets"</span>)</code></pre>
<ul>
<li>Does a new browser window or tab open up?</li>
<li>In RStudio hit the "stop" button in the terminal panel to exit the demo</li>
</ul>
</div>
<div class="section slide level1" id="you-are-ready-to-go">
<h1>You are ready to go!</h1>
<p>See you on December 3rd to the 5th to find out how to go from these basic steps to using R to learn from your data.</p>
<p>Can't wait to see you in Madison!</p>
</div>
<div class="section slide level1" id="attribution-and-license">
<h1>Attribution and License</h1>
This work (<span property="dct:title">R Tutorial for Education</span>, by <a href="www.jaredknowles.com" rel="dct:creator"><span property="dct:title">Jared E. Knowles</span></a>), in service of the <a href="http://www.dpi.wi.gov" rel="dct:publisher"><span property="dct:title">Wisconsin Department of Public Instruction</span></a>, is free of known copyright restrictions.
</p>
<p xmlns:dct="http://purl.org/dc/terms/">
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