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DESCRIPTION
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DESCRIPTION
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Package:IDseq
Type: Package
Title: Split barcoded FASTQ files and analyse data from the IDseq method
Version: 0.1.0
Date: 2016-06-02
Authors@R: person("Jessie", "Van Buggenum", email="jessievanbuggenum@gmail.com",
role = c("aut", "cre"))
Maintainer: Jessie Van Buggenum <jessievanbuggenum@gmail.com>
Description: Immuno-Detection by sequencingq (ID-seq) method combines specific protein detection
via antibodies with sequencing antibody-specific DNA barcodes. This package
allows the processing of FASTQ files that were generated after performing
ID-seq experiments and provides functions to match and count barcodes.
License: GPL-3
LazyData: true
Depends:
R (< 4.0.0),
R (>= 3.2.0),
data.table (>= 1.9.6),
dplyr (>= 0.4.3),
tools (>= 3.2.0),
futile.logger (>= 1.4.1),
ggplot2 (>= 2.0.0),
methods
Imports:
dplyr (>= 0.4.3),
ShortRead (>= 1.26.0),
stringr (>= 1.0.0),
data.table (>= 1.9.6),
foreach (>= 1.4.3),
doParallel (>= 1.0.10),
doSNOW (>= 1.0.14),
futile.logger (>= 1.4.1),
tools (>= 3.2.0),
ggplot2 (>= 2.0.0)
RoxygenNote: 5.0.1
biocViews: @BIOCVIEWS@