{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":692194165,"defaultBranch":"main","name":"artic-reference-benchmark","ownerLogin":"jeremyButtler","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-09-15T19:21:10.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/52676572?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1694807968.0","currentOid":""},"activityList":{"items":[{"before":"350f9f05561fe44179645e70772a501b47f6f2ab","after":"aa92ba62b9bf7becc557f314d672b83309d788e1","ref":"refs/heads/main","pushedAt":"2023-10-11T04:57:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tmodified: 00-RScripts/11-graph.r\n\tmodified: 00-programs/alnSeqSrc/Makefile\n\tmodified: 00-programs/alnSeqSrc/alnSeq.c\n\tmodified: 00-programs/alnSeqSrc/alnSeqDefaults.h\n\tmodified: 00-programs/alnSeqSrc/generalAlnVectFun.h\n\tmodified: 00-programs/alnSeqSrc/memWater.c\n\tnew file: 00-programs/alnSeqSrc/oldVectWrapAvx512.h\n\tmodified: 00-programs/alnSeqSrc/scoresST.c\n\tmodified: 00-programs/alnSeqSrc/scoresST.h\n\tmodified: 00-programs/alnSeqSrc/seqStruct.c\n\tnew file: 00-programs/alnSeqSrc/vectWrapAvx512Fun.h\n\tnew file: 00-programs/alnSeqSrc/vectWrapSSE2Fun.h\n\tmodified: 00-programs/alnSeqSrc/vectorWrap.h\n\tmodified: 00-programs/alnSeqSrc/waterman.c\n\tmodified: 00-programs/alnSeqSrc/waterman.h\n\tmodified: 11-quast-bench/all-1000x-snps-indels.svg\n\tmodified: 11-quast-bench/all-1000x-snps-ref.svg\n\tmodified: 11-quast-bench/all-100x-snps-indels.svg\n\tmodified: 11-quast-bench/all-100x-snps-ref.svg\n\tmodified: 11-quast-bench/all-300x-snps-indels.svg\n\tmodified: 11-quast-bench/all-300x-snps-ref.svg\n\tmodified: 11-quast-bench/all-500x-snps-indels.svg\n\tmodified: 11-quast-bench/all-500x-snps-ref.svg\n\tmodified: 11-quast-bench/all-50x-snps-indels.svg\n\tmodified: 11-quast-bench/all-50x-snps-ref.svg\n\tmodified: 11-quast-bench/all-masked.svg\n\tmodified: 11-quast-bench/all-over30x-length-depth.svg\n\tmodified: 11-quast-bench/all-over30x-length-ref.svg\n\tmodified: 11-quast-bench/all-over30x-memory.svg\n\tmodified: 11-quast-bench/all-over30x-snps-depth.svg\n\tmodified: 11-quast-bench/all-over30x-snps-indels.svg\n\tmodified: 11-quast-bench/all-over30x-snps-ref.svg\n\tmodified: 11-quast-bench/all-over30x-time.svg\n\tmodified: 11-quast-bench/all-snps-depth.svg\n\tmodified: 11-quast-bench/all-snps-indels.svg\n\tmodified: 11-quast-bench/all-snps-ref.svg\n\tmodified: 11-quast-bench/buildCon-snps-depth.svg\n\tmodified: 11-quast-bench/buildCon-snps-indels.svg\n\tmodified: 11-quast-bench/buildCon-snps-ref.svg\n\tmodified: 11-quast-bench/ivar-snps-depth.svg\n\tmodified: 11-quast-bench/ivar-snps-indels.svg\n\tmodified: 11-quast-bench/ivar-snps-ref.svg\n\tnew file: 11-quast-bench/lilo-length-ref.svg\n\tmodified: 11-quast-bench/lilo-snps-depth.svg\n\tmodified: 11-quast-bench/lilo-snps-indels.svg\n\tmodified: 11-quast-bench/lilo-snps-ref.svg\n\tmodified: README.md\n\tmodified: update-log.md","shortMessageHtmlLink":"\tmodified: 00-RScripts/11-graph.r"}},{"before":"529a44998c4ec755e4a03b69d2436e447cfcda16","after":"350f9f05561fe44179645e70772a501b47f6f2ab","ref":"refs/heads/main","pushedAt":"2023-10-10T04:50:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tmodified: README.md","shortMessageHtmlLink":"\tmodified: README.md"}},{"before":"de897918dba3e55d34a6e9ce391fe5cc0f914bc0","after":"529a44998c4ec755e4a03b69d2436e447cfcda16","ref":"refs/heads/main","pushedAt":"2023-10-10T04:48:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tnew file: 00-RScripts/11-graph.r\n\tnew file: 00-scripts/benchAll2.sh\n\tnew file: 00-scripts/checkIfRunTest2.awk\n\tnew file: 00-scripts/getStats2.sh\n\tnew file: 11-quast-bench/11-quast-bench-cleanup.tsv\n\tmodified: 11-quast-bench/11-quast-bench-stats.tsv\n\tnew file: 11-quast-bench/all-1000x-snps-indels.svg\n\tnew file: 11-quast-bench/all-1000x-snps-ref.svg\n\tnew file: 11-quast-bench/all-100x-snps-indels.svg\n\tnew file: 11-quast-bench/all-100x-snps-ref.svg\n\tnew file: 11-quast-bench/all-300x-snps-indels.svg\n\tnew file: 11-quast-bench/all-300x-snps-ref.svg\n\tnew file: 11-quast-bench/all-500x-snps-indels.svg\n\tnew file: 11-quast-bench/all-500x-snps-ref.svg\n\tnew file: 11-quast-bench/all-50x-snps-indels.svg\n\tnew file: 11-quast-bench/all-50x-snps-ref.svg\n\tnew file: 11-quast-bench/all-masked.svg\n\tnew file: 11-quast-bench/all-over30x-length-depth.svg\n\tnew file: 11-quast-bench/all-over30x-length-ref.svg\n\tnew file: 11-quast-bench/all-over30x-memory.svg\n\tnew file: 11-quast-bench/all-over30x-snps-depth.svg\n\tnew file: 11-quast-bench/all-over30x-snps-indels.svg\n\tnew file: 11-quast-bench/all-over30x-snps-ref.svg\n\tnew file: 11-quast-bench/all-over30x-time.svg\n\tnew file: 11-quast-bench/all-snps-depth.svg\n\tnew file: 11-quast-bench/all-snps-indels.svg\n\tnew file: 11-quast-bench/all-snps-ref.svg\n\tnew file: 11-quast-bench/buildCon-snps-depth.svg\n\tnew file: 11-quast-bench/buildCon-snps-indels.svg\n\tnew file: 11-quast-bench/buildCon-snps-ref.svg\n\tnew file: 11-quast-bench/ivar-snps-depth.svg\n\tnew file: 11-quast-bench/ivar-snps-indels.svg\n\tnew file: 11-quast-bench/ivar-snps-ref.svg\n\tnew file: 11-quast-bench/lilo-snps-depth.svg\n\tnew file: 11-quast-bench/lilo-snps-indels.svg\n\tnew file: 11-quast-bench/lilo-snps-ref.svg\n\tmodified: README.md","shortMessageHtmlLink":"\tnew file: 00-RScripts/11-graph.r"}},{"before":"3f23fc390e20fb1633873b61b0139fb1ad0525df","after":"de897918dba3e55d34a6e9ce391fe5cc0f914bc0","ref":"refs/heads/main","pushedAt":"2023-09-27T07:45:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"Update error measurment","shortMessageHtmlLink":"Update error measurment"}},{"before":"913964363c3d2c4dff4e3ccc34942cce90aea31f","after":"3f23fc390e20fb1633873b61b0139fb1ad0525df","ref":"refs/heads/main","pushedAt":"2023-09-27T07:42:50.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tdeleted: 00-programs/findCoInfctSrc/buildCon\n\tdeleted: \"00-scripts/\\\\\"","shortMessageHtmlLink":"\tdeleted: 00-programs/findCoInfctSrc/buildCon"}},{"before":"136ae7fa577ecd1b3b8319a1cf79496009589ad7","after":"913964363c3d2c4dff4e3ccc34942cce90aea31f","ref":"refs/heads/main","pushedAt":"2023-09-22T05:55:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"removing my pipeline","shortMessageHtmlLink":"removing my pipeline"}},{"before":"390886efc68b597ae0b9f9521cf999613765d8e0","after":"136ae7fa577ecd1b3b8319a1cf79496009589ad7","ref":"refs/heads/main","pushedAt":"2023-09-22T05:51:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tmodified: 00-notes/00-notes-01To0X.md\n\tnew file: 10-new-bench/10-bench-artic-ivar-stats.tsv","shortMessageHtmlLink":"\tmodified: 00-notes/00-notes-01To0X.md"}},{"before":"f98cc6bbe3a1558ba83ac7a859967493de46d4f9","after":"390886efc68b597ae0b9f9521cf999613765d8e0","ref":"refs/heads/main","pushedAt":"2023-09-22T05:50:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tmodified: 00-programs/findCoInfctSrc/samEntryStruct.c\n\tmodified: 00-programs/stichSrc/samFunSrc/samEntryStruct.h\n\tmodified: 00-scripts/buildAmpCons.sh","shortMessageHtmlLink":"\tmodified: 00-programs/findCoInfctSrc/samEntryStruct.c"}},{"before":"6416fd187f3ad9d4809d3ce675c15fc94690c48d","after":"f98cc6bbe3a1558ba83ac7a859967493de46d4f9","ref":"refs/heads/main","pushedAt":"2023-09-21T18:43:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tmodified: README.md","shortMessageHtmlLink":"\tmodified: README.md"}},{"before":"b8699450266d7504c51fc41206bf88ce5a873d1f","after":"6416fd187f3ad9d4809d3ce675c15fc94690c48d","ref":"refs/heads/main","pushedAt":"2023-09-21T07:55:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tdeleted: 00-programs/stichSrc/samFunSrc/.samEntryStruct.h.swp\n\tmodified: 00-scripts/benchAll.sh\n\tmodified: 00-scripts/benchLILO.sh\n\tmodified: 00-scripts/buildAmpCons.sh\n\tnew file: 00-scripts/runIvar.sh\n\tnew file: 00-scripts/setUpIvarPrimFile.awk\n\tmodified: update-log.md","shortMessageHtmlLink":"\tdeleted: 00-programs/stichSrc/samFunSrc/.samEntryStruct.h.swp"}},{"before":"6ee59d09c19e947c81018d78bd639282cd0924af","after":"b8699450266d7504c51fc41206bf88ce5a873d1f","ref":"refs/heads/main","pushedAt":"2023-09-20T18:31:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tnew file: samFunSrc/.samEntryStruct.h.swp\n\tmodified: samFunSrc/samEntryStruct.h\n\tmodified: stichMinimapFun.c\n\tmodified: ../../update-log.md\n\tmodified: ../../09-benchmark/09-bench-all-2-stats.tsv","shortMessageHtmlLink":"\tnew file: samFunSrc/.samEntryStruct.h.swp"}},{"before":"3e816ddfccd934bf2f2ca8ce5042eb7a137d1c35","after":"6ee59d09c19e947c81018d78bd639282cd0924af","ref":"refs/heads/main","pushedAt":"2023-09-20T05:13:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"README update","shortMessageHtmlLink":"README update"}},{"before":"99e617f1dd40cefa73c27f70830e9e0de7efec55","after":"3e816ddfccd934bf2f2ca8ce5042eb7a137d1c35","ref":"refs/heads/main","pushedAt":"2023-09-18T17:56:16.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tmodified: 00-notes/00-notes-01To0X.md\n\tmodified: 00-scripts/benchAll.sh\n\tmodified: 00-scripts/buildAmpCons.sh\n\tnew file: 00-scripts/checkIfRunTest.awk\n\tmodified: 06-alt-schemes/06-schemes/SARS-CoV-2/V4.1/SARS-CoV-2.reference.fasta\n\tdeleted: 06-alt-schemes/06-schemes/SARS-CoV-2/V4.1/SARS-CoV-2.reference.fasta.fai\n\tnew file: 09-benchmark/09-bench-all-2-stats.tsv\n\tdeleted: 09-benchmark/09-benchAll-stats.tsv\n\tnew file: update-log.md","shortMessageHtmlLink":"\tmodified: 00-notes/00-notes-01To0X.md"}},{"before":"7e8b444b4617eb4fe7fea9a1cf0b1a5ceb8a25a8","after":"99e617f1dd40cefa73c27f70830e9e0de7efec55","ref":"refs/heads/main","pushedAt":"2023-09-16T01:07:51.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"\tmodified: README.md","shortMessageHtmlLink":"\tmodified: README.md"}},{"before":null,"after":"7e8b444b4617eb4fe7fea9a1cf0b1a5ceb8a25a8","ref":"refs/heads/main","pushedAt":"2023-09-15T19:59:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jeremyButtler","name":null,"path":"/jeremyButtler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/52676572?s=80&v=4"},"commit":{"message":"first commit","shortMessageHtmlLink":"first commit"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADlDs1DQA","startCursor":null,"endCursor":null}},"title":"Activity ยท jeremyButtler/artic-reference-benchmark"}