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setup.py
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setup.py
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#!/usr/bin/env python
from setuptools import setup, find_packages
with open('README.md') as readme_file:
readme = readme_file.read()
version='0.0.8'
requirements = [
"ete3",
"datetime",
"statistics",
"svgwrite",
"pycairo<=1.20.0",
"cairosvg",
"argparse",
"numpy",
"six"] #could not use ete3 without six
classifiers = [
'Development Status :: 2 - Pre-Alpha',
'Intended Audience :: Science/Research',
"Intended Audience :: Healthcare Industry",
'License :: OSI Approved :: MIT License',
'Natural Language :: English',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
"Programming Language :: Python :: 3.9",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Scientific/Engineering :: Visualization"]
setup(
author="Jennifer L Havens",
author_email='jhavens@ucsd.edu',
python_requires='>=3.7',
classifiers=classifiers,
description="Visualize lineages overtime, with phylogentic context, based on viral genomes",
packages=find_packages(),#['scripts', 'scripts.*'],#find_packages(),#['scripts'],#find_packages(include=['epimuller', 'epimuller.*']),
entry_points={
'console_scripts': [
'epimuller=scripts.mutationLinages_report:main',
'epimuller-draw=scripts.drawMuller:main',
'epimuller-define=scripts.defineAndCountClades:main',
'epimuller-parse=scripts.parseFastaNames:main',
],
},
install_requires=requirements,
license="MIT license",
long_description=readme,
long_description_content_type="text/markdown",
include_package_data=True,
keywords='epimuller',
name='epimuller',
url='https://github.com/jennifer-bio/epimuller',
version=version,
)