{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":523521968,"defaultBranch":"main","name":"poolgen","ownerLogin":"jeffersonfparil","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-08-10T23:09:07.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/55180317?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1706051450.0","currentOid":""},"activityList":{"items":[{"before":"ece069a01277d416d305fb273081353e536da929","after":null,"ref":"refs/heads/dev","pushedAt":"2024-01-23T23:10:50.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"}},{"before":"1af885639af853dd516a35ec2c172c2bbaffef7f","after":"ed4588b1ea83d0e37adf2a98da5879327095138f","ref":"refs/heads/main","pushedAt":"2024-01-23T23:10:41.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Merge pull request #15 from jeffersonfparil/dev\n\nCorrecting StudentT distribution df as n-1 from p-1","shortMessageHtmlLink":"Merge pull request #15 from jeffersonfparil/dev"}},{"before":"1af885639af853dd516a35ec2c172c2bbaffef7f","after":"ece069a01277d416d305fb273081353e536da929","ref":"refs/heads/dev","pushedAt":"2024-01-23T23:09:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Correcting StudentT distribution df as n-1 from p-1","shortMessageHtmlLink":"Correcting StudentT distribution df as n-1 from p-1"}},{"before":null,"after":"1af885639af853dd516a35ec2c172c2bbaffef7f","ref":"refs/heads/dev","pushedAt":"2024-01-23T23:09:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Update tajima_d.rs","shortMessageHtmlLink":"Update tajima_d.rs"}},{"before":"8062427820b389d2a8aee69171e1bb8d8f0e2ef8","after":"1af885639af853dd516a35ec2c172c2bbaffef7f","ref":"refs/heads/main","pushedAt":"2024-01-09T00:26:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Update tajima_d.rs","shortMessageHtmlLink":"Update tajima_d.rs"}},{"before":"154564311fc732b4206b80700ccc0bf799047d1b","after":"8062427820b389d2a8aee69171e1bb8d8f0e2ef8","ref":"refs/heads/main","pushedAt":"2023-11-30T22:51:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Rectified gudmc interpretation of Fst deviations","shortMessageHtmlLink":"Rectified gudmc interpretation of Fst deviations"}},{"before":"b4fa36958a7929013acf9bd1d58e0a8a998dae6a","after":"154564311fc732b4206b80700ccc0bf799047d1b","ref":"refs/heads/main","pushedAt":"2023-11-13T05:52:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"fixing the term mininum quality to the more appropriate maximum base error rate","shortMessageHtmlLink":"fixing the term mininum quality to the more appropriate maximum base …"}},{"before":"9d79e439bc1591fe7effae50eea23994156eb2da","after":"b4fa36958a7929013acf9bd1d58e0a8a998dae6a","ref":"refs/heads/main","pushedAt":"2023-11-13T05:12:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"updating the readme file","shortMessageHtmlLink":"updating the readme file"}},{"before":"72ac0039eeaa02d88532808c109a063784fe0ed3","after":"9d79e439bc1591fe7effae50eea23994156eb2da","ref":"refs/heads/main","pushedAt":"2023-11-13T05:08:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"fixing the term mininum quality to the more appropriate maximum base error rate","shortMessageHtmlLink":"fixing the term mininum quality to the more appropriate maximum base …"}},{"before":"213d4f400752505445a7267ef3c1a288eb593fdf","after":"72ac0039eeaa02d88532808c109a063784fe0ed3","ref":"refs/heads/main","pushedAt":"2023-11-11T11:25:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"rectifying vcf filtering by maf","shortMessageHtmlLink":"rectifying vcf filtering by maf"}},{"before":"40052978641d4dd92bd4964807ab3a7ab9bd525f","after":"213d4f400752505445a7267ef3c1a288eb593fdf","ref":"refs/heads/main","pushedAt":"2023-11-09T19:59:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"imputation module redacted needs review and should use actual data to impute instead of simply setting them as missing + just continue working on the simulation module which is a hobby project and completely separate from my current work","shortMessageHtmlLink":"imputation module redacted needs review and should use actual data to…"}},{"before":"d706f8eb551009b82cd304378d0607428c488816","after":"40052978641d4dd92bd4964807ab3a7ab9bd525f","ref":"refs/heads/main","pushedAt":"2023-11-09T01:37:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"will need to improve filtering in the imputation module","shortMessageHtmlLink":"will need to improve filtering in the imputation module"}},{"before":"f36cf103b1e9504141468191622846c2ff708a92","after":"d706f8eb551009b82cd304378d0607428c488816","ref":"refs/heads/main","pushedAt":"2023-11-08T21:36:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"preliminary tests show that the refactorisation of a-LD-kNNi has improved computational efficiency","shortMessageHtmlLink":"preliminary tests show that the refactorisation of a-LD-kNNi has impr…"}},{"before":"c9b66f0c768cd4301555ae77ad23ca171be2efa1","after":"f36cf103b1e9504141468191622846c2ff708a92","ref":"refs/heads/main","pushedAt":"2023-11-08T10:36:23.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"start working on a simulation module","shortMessageHtmlLink":"start working on a simulation module"}},{"before":"0bc4bfd8c190f34428e88c1099c073aeec472d11","after":"c9b66f0c768cd4301555ae77ad23ca171be2efa1","ref":"refs/heads/main","pushedAt":"2023-11-06T05:24:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"trying to make a-LD-kNNi more efficient","shortMessageHtmlLink":"trying to make a-LD-kNNi more efficient"}},{"before":"b708567d64e75e9fe0b374dc74e6ff9049c9f94d","after":"0bc4bfd8c190f34428e88c1099c073aeec472d11","ref":"refs/heads/main","pushedAt":"2023-11-03T20:14:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"90bdb7d68569972332ce24be8e4f899a56938829","after":"b708567d64e75e9fe0b374dc74e6ff9049c9f94d","ref":"refs/heads/main","pushedAt":"2023-11-03T20:13:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"b3575c6a36bad32cd01fc8acd866e9504c43f426","after":"90bdb7d68569972332ce24be8e4f899a56938829","ref":"refs/heads/main","pushedAt":"2023-11-03T20:05:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"de05872e5c0206332617fbea6dfd327eb68faf0f","after":"b3575c6a36bad32cd01fc8acd866e9504c43f426","ref":"refs/heads/main","pushedAt":"2023-11-03T20:02:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"5ecce9b622183b42b8ea3e43ebd1a4769df611a6","after":"de05872e5c0206332617fbea6dfd327eb68faf0f","ref":"refs/heads/main","pushedAt":"2023-11-03T09:48:25.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"drafted vcf2sync","shortMessageHtmlLink":"drafted vcf2sync"}},{"before":"326c28ae383537639999c1ec4bd3056f1450a096","after":"5ecce9b622183b42b8ea3e43ebd1a4769df611a6","ref":"refs/heads/main","pushedAt":"2023-11-03T05:12:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"drafted vcf2sync","shortMessageHtmlLink":"drafted vcf2sync"}},{"before":"dd6a337a7e8d536a3549589eb9444843dc2b40b0","after":"326c28ae383537639999c1ec4bd3056f1450a096","ref":"refs/heads/main","pushedAt":"2023-11-02T01:41:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"debugging the bugfix - only marking the imputed loci with f64::INFINITY and skipping the loci which were not imputed because they were completely missing across pools","shortMessageHtmlLink":"debugging the bugfix - only marking the imputed loci with f64::INFINI…"}},{"before":"0a49043563410d08b61dd6d65d99923ab86a03f1","after":"dd6a337a7e8d536a3549589eb9444843dc2b40b0","ref":"refs/heads/main","pushedAt":"2023-11-02T01:30:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"rectified imputation and filtering bug where the coverages were not changed from missing after imputation: solution was to change f64::NAN into f64::INFINITY for imputed loci","shortMessageHtmlLink":"rectified imputation and filtering bug where the coverages were not c…"}},{"before":"dcfab9eecc9bf5c3d58c446ded0d1763201c866d","after":"0a49043563410d08b61dd6d65d99923ab86a03f1","ref":"refs/heads/main","pushedAt":"2023-11-02T00:46:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"adding missingness rate messages","shortMessageHtmlLink":"adding missingness rate messages"}},{"before":"40890d5057fb29ad435da21b599bd08be3a107df","after":"dcfab9eecc9bf5c3d58c446ded0d1763201c866d","ref":"refs/heads/main","pushedAt":"2023-11-02T00:23:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Adding report for data missingness","shortMessageHtmlLink":"Adding report for data missingness"}},{"before":"57a9acce6a4842ac78a4a0020e94952923adceb1","after":"40890d5057fb29ad435da21b599bd08be3a107df","ref":"refs/heads/main","pushedAt":"2023-11-01T23:22:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"ready to test imputation modules","shortMessageHtmlLink":"ready to test imputation modules"}},{"before":"e8d68e426e5901be6d7ccf791c0a0fd3a558602f","after":"57a9acce6a4842ac78a4a0020e94952923adceb1","ref":"refs/heads/main","pushedAt":"2023-11-01T09:59:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"updating parameter descriptions","shortMessageHtmlLink":"updating parameter descriptions"}},{"before":"67749f5086b90aaf3057c872d85c48cf54a4710d","after":"e8d68e426e5901be6d7ccf791c0a0fd3a558602f","ref":"refs/heads/main","pushedAt":"2023-11-01T09:12:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Improving input parameter description","shortMessageHtmlLink":"Improving input parameter description"}},{"before":"a972ecf17b5a740dd6e8b295e9c68e3d7321281d","after":"67749f5086b90aaf3057c872d85c48cf54a4710d","ref":"refs/heads/main","pushedAt":"2023-11-01T06:55:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"added pool and loci filtering after setting loci below some depth threshold to missing + modularising a-LD-kNNi to improve maintenance","shortMessageHtmlLink":"added pool and loci filtering after setting loci below some depth thr…"}},{"before":"a2a6f9c8163854701860c5a2555ec74ac5cee2d2","after":"a972ecf17b5a740dd6e8b295e9c68e3d7321281d","ref":"refs/heads/main","pushedAt":"2023-10-31T09:41:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeffersonfparil","name":"Jeff Paril","path":"/jeffersonfparil","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55180317?s=80&v=4"},"commit":{"message":"Rectified logic becuase it was hard to visualise due to the leng of the trait function. Refactor at some point to improve readability and hence maintanability in the future + add tests to make sure the imputed allele frequencies add up to one in each locus","shortMessageHtmlLink":"Rectified logic becuase it was hard to visualise due to the leng of t…"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD52BhrgA","startCursor":null,"endCursor":null}},"title":"Activity · jeffersonfparil/poolgen"}