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jcblemai/README.md

Welcome 🤗😊

I am a researcher in infectious disease dynamics where I develop models that combine scientific knowledge and state-of-the-art statistical methods to guide effective policies from noisy, incomplete, and often misleading data. Most of my work concerns COVID-19, seasonal influenza or cholera. I’m currently a post-doc with Justin Lessler and Jess K. Edwards at The University of North Carolina at Chapel Hill, working on hybrid mechanistic/statistical models. My current projects include:

  • flepiMoP (GitHub), an open-source flexible epidemic modeling pipeline that can simulate most compartmental models over a wide range of connected metapopulation setups. It has been used to track the COVID-19 pandemic and seasonal influenza, providing forecasts and scenarios to decision-makers around the world.
  • InfluPaint, where we inpaint epidemic curves generated by denoising diffusion probabilistic models, to produce forecasts of influenza transmission in the U.S.
  • SMIDDY, aimed to foster the community of infectious disease modelers in Switzerland 👯.

I’m usually working from Vevey in Switzerland🇨🇭. Don’t hesitate to reach out if you pass by the Geneva Lake area, or even if you don’t. Happy to discuss anything 🤔

Pinned

  1. HopkinsIDD/flepiMoP HopkinsIDD/flepiMoP Public

    The Flexible Epidemic Modeling Pipeline

    HTML 6

  2. HopkinsIDD/COVIDScenarioPipeline HopkinsIDD/COVIDScenarioPipeline Public

    Public shared code for doing scenario forecasting and creating reports for various governmental entities.

    HTML 104 47

  3. inpainting-idforecasts inpainting-idforecasts Public

    Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting

    Jupyter Notebook 6

  4. COVID-19_italy-vaccination-oc COVID-19_italy-vaccination-oc Public

    Optimal control for an hypothetical COVID-19 vaccine, available with limited supply in Italy.

    Jupyter Notebook 1

  5. PhDThesis PhDThesis Public

    TeX

  6. haiti-mass-ocv-campaign haiti-mass-ocv-campaign Public

    R