/
serum_info.yaml
224 lines (185 loc) · 5.49 KB
/
serum_info.yaml
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# Information about each serum sample.
# For each sample ID, give name and description.
# If relevant, also give species and vaccination (or infection) info.
#------------------------------
# Controls:
mock:
name: no-serum
description: no-serum control
group: mock
plasmid:
name: plasmid
description: plasmid used as control to estimate sequencing error rate
group: plasmid
#------------------------------
# Monoclonal antibodies targeting antigenic region B
5A01:
name: antibody-5A01
description: site B-targeting monoclonal antibody 5A01 from Seth Zost and Scott Hensley
group: antibody_region_B
3C04:
name: antibody-3C04
description: site B-targeting monoclonal antibody 3C04 from Seth Zost and Scott Hensley
group: antibody_region_B
3C06:
name: antibody-3C06
description: site B-targeting monoclonal antibody 3C06 from Seth Zost and Scott Hensley
group: antibody_region_B
4C01:
name: antibody-4C01
description: site B-targeting monoclonal antibody 4C01 from Seth Zost and Scott Hensley
group: antibody_region_B
#------------------------------
# Monoclonal antibodies targeting lower on HA's head
4F03:
name: antibody-4F03
description: lower head-targeting monoclonal antibody 4F03 from Seth Zost and Scott Hensley
group: antibody_lower_head
1C04:
name: antibody-1C04
description: lower head-targeting monoclonal antibody 1C04 from Seth Zost and Scott Hensley
group: antibody_lower_head
#------------------------------
# Ferret sera
f9267neg:
name: Pitt-1-preinf
species: ferret
description: Lakdawala lab ferret, before infection
vaccination: pre
group: ferret
f9267d23:
name: Pitt-1-postinf
species: ferret
description: Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA
vaccination: post
group: ferret
f9435neg:
name: Pitt-2-preinf
species: ferret
description: Lakdawala lab ferret, before infection
vaccination: pre
group: ferret
f9435d23:
name: Pitt-2-postinf
species: ferret
description: Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA
vaccination: post
group: ferret
f9437neg:
name: Pitt-3-preinf
species: ferret
description: Lakdawala lab ferret, before infection
vaccination: pre
group: ferret
f9437d23:
name: Pitt-3-postinf
species: ferret
description: Lakdawala lab ferret, 23 days after infection by Perth/2009 with our HA
vaccination: post
group: ferret
WHOCCPerth:
name: WHO-Perth2009
species: ferret
description: ferret infected by Melbourne WHO CC with their Perth/2009 strain
vaccination: post
group: ferret
WHOCCVic:
name: WHO-Victoria2011
species: ferret
description: ferret infected by Melbourne WHO CC with their Victoria/2011 strain
vaccination: post
group: ferret
#------------------------------
# Human sera from Terry Stevens-Ayers in Hutch VIDD Division
VIDD1:
name: 2010-age-21
species: human
description: collected at Hutch in 2/2010 from person born in 1989
group: VIDD_sera
VIDD2:
name: 2009-age-53
species: human
description: collected at Hutch in 1/2009 from person born in 1956
group: VIDD_sera
VIDD3:
name: 2009-age-53-plus-2-months
species: human
description: second sample collected at Hutch in 3/2009 from person born in 1956
group: VIDD_sera
VIDD4:
name: 2009-age-64
species: human
description: collected at Hutch in 11/2008 from person born in 1945
group: VIDD_sera
VIDD5:
name: 2009-age-65
species: human
description: collected at Hutch in 6/2009 from person born in 1944
group: VIDD_sera
#------------------------------
# Human sera from Seth Zost and Scott Hensley
557v1:
name: 2015-age-25-prevacc
species: human
description: collected before 2015/2016 vaccine from person born in 1990
vaccination: pre
group: Hensley_sera
557v2:
name: 2015-age-25-vacc
species: human
description: collected after 2015/2016 vaccine from person born in 1990
vaccination: post
group: Hensley_sera
574v1:
name: 2015-age-29-prevacc
species: human
description: collected before 2015/2016 vaccine from person born in 1986
vaccination: pre
group: Hensley_sera
574v2:
name: 2015-age-29-vacc
species: human
description: collected after 2015/2016 vaccine from person born in 1986
vaccination: post
group: Hensley_sera
589v1:
name: 2015-age-48-prevacc
species: human
description: collected before 2015/2016 vaccine from person born in 1967
vaccination: pre
group: Hensley_sera
589v2:
name: 2015-age-48-vacc
species: human
description: collected after 2015/2016 vaccine from person born in 1967
vaccination: post
group: Hensley_sera
571v1:
name: 2015-age-49-prevacc
species: human
description: collected before 2015/2016 vaccine from person born in 1966
vaccination: pre
group: Hensley_sera
571v2:
name: 2015-age-49-vacc
species: human
description: collected after 2015/2016 vaccine from person born in 1966
vaccination: post
group: Hensley_sera
#------------------------------
# Human sera with monoclonal 4F03 spike-in
VIDD5andlow4F03:
name: 2009-age-65-with-low-4F03
species: human
description: collected at Hutch in 6/2009 from person b1944 with 4F03 at low stringency
group: serum_mAb_spike
VIDD5andmid4F03:
name: 2009-age-65-with-mid-4F03
species: human
description: collected at Hutch in 6/2009 from person b1944 with 4F03 at medium stringency
group: serum_mAb_spike
VIDD5andhi4F03:
name: 2009-age-65-with-hi-4F03
species: human
description: collected at Hutch in 6/2009 from person b1944 with 4F03 at high stringency
group: serum_mAb_spike