test_suite.yml

name: CI

on: [push]

jobs:
  build:

    if: "!contains(github.event.head_commit.message, 'skip ci')"

    runs-on: ubuntu-latest

    steps:

    - uses: actions/checkout@v2
    - name: Checkout submodules
      shell: bash
      run: |
        auth_header="$(git config --local --get http.https://github.com/.extraheader)"
        git submodule sync --recursive
        git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1

    - name: Install anaconda
      run: |
        wget http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh;
        bash ~/miniconda.sh -b -p $HOME/miniconda
        export PATH="$HOME/miniconda/bin:$PATH"
        conda config --set always_yes yes --set changeps1 no
        conda update -q conda
        conda install nomkl numpy scipy matplotlib
        conda install -c conda-forge pybind11 autograd celerite
        pip install corner

    - name: Install kima and pykima
      run: |
        export PATH="$HOME/miniconda/bin:$PATH"

        make -j 4
        python setup.py install


    - name: Run 51Peg example
      run: |
        export PATH="$HOME/miniconda/bin:$PATH"
        cd tests/test_suite
        cp OPTIONS ../../examples/51Peg/OPTIONS
        kima-run ../../examples/51Peg -s 43
        # test the output
        echo "Comparing output to known output for seed"
        cmp 51Peg_sample_seed43.txt ../../examples/51Peg/sample.txt

    - name: Run CoRoT7 example
      run: |
        export PATH="$HOME/miniconda/bin:$PATH"
        cd tests/test_suite
        cp OPTIONS ../../examples/CoRoT7/OPTIONS
        kima-run ../../examples/CoRoT7 -s 43
        # test the output
        echo "Comparing output to known output for seed"
        cmp CoRoT7_sample_seed43.txt ../../examples/CoRoT7/sample.txt

    - name: Run BL2009 example
      run: |
        export PATH="$HOME/miniconda/bin:$PATH"
        cd tests/test_suite
        cp OPTIONS ../../examples/BL2009/OPTIONS
        kima-run ../../examples/BL2009 -s 43
        # test the output
        echo "Comparing output to known output for seed"
        cmp BL2009_sample_seed43.txt ../../examples/BL2009/sample.txt

    - name: Run multi_instrument example
      run: |
        export PATH="$HOME/miniconda/bin:$PATH"
        cd tests/test_suite
        cp OPTIONS ../../examples/multi_instrument/OPTIONS
        kima-run ../../examples/multi_instrument -s 43
        # test the output
        echo "Comparing output to known output for seed"
        cmp multi_instrument_sample_seed43.txt ../../examples/multi_instrument/sample.txt

    - name: Run studentT example
      run: |
        export PATH="$HOME/miniconda/bin:$PATH"
        cd tests/test_suite
        cp OPTIONS ../../examples/studentT/OPTIONS
        kima-run ../../examples/studentT -s 43
        # test the output
        echo "Comparing output to known output for seed"
        cmp studentT_sample_seed43.txt ../../examples/studentT/sample.txt