diff --git a/DESCRIPTION b/DESCRIPTION
index 4e65de2..4bfbc4c 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,15 +1,15 @@
 Package: sparsebn
 Title: Learning Sparse Bayesian Networks from High-Dimensional Data
-Version: 0.0.2
-Date: 2016-11-28
+Version: 0.0.3
+Date: 2017-03-10
 Authors@R: person("Bryon", "Aragam", email = "sparsebn@gmail.com", role = c("aut", "cre"))
 Maintainer: Bryon Aragam <sparsebn@gmail.com>
 Description: Fast methods for learning sparse Bayesian networks from high-dimensional data using sparse regularization. Designed to incorporate mixed experimental and observational data with thousands of variables with either continuous or discrete observations.
 Depends:
     R (>= 3.2.3),
-    sparsebnUtils (>= 0.0.3),
-    ccdrAlgorithm (>= 0.0.2),
-    discretecdAlgorithm (>= 0.0.2)
+    sparsebnUtils (>= 0.0.4),
+    ccdrAlgorithm (>= 0.0.3),
+    discretecdAlgorithm (>= 0.0.3)
 Suggests:
     knitr,
     rmarkdown,
@@ -20,6 +20,6 @@ Suggests:
 URL: https://github.com/itsrainingdata/sparsebn
 BugReports: https://github.com/itsrainingdata/sparsebn/issues
 License: GPL (>= 2)
-RoxygenNote: 5.0.1
+RoxygenNote: 6.0.1
 VignetteBuilder: knitr
 LazyData: true
diff --git a/NEWS.md b/NEWS.md
index 1986590..f71d919 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,3 +1,9 @@
+# sparsebn 0.0.3
+
+## Bug fixes
+
+* Minor bug fixes
+
 # sparsebn 0.0.2
 
 ## Features
diff --git a/R/sparsebn-main.R b/R/sparsebn-main.R
index 9dafbbe..e3ba8d7 100644
--- a/R/sparsebn-main.R
+++ b/R/sparsebn-main.R
@@ -47,12 +47,10 @@
 #'
 #' @examples
 #'
-#' \dontrun{
 #' # Estimate a DAG from the cytometry data
 #' data(cytometryContinuous)
 #' dat <- sparsebnData(cytometryContinuous$data, type = "c", ivn = cytometryContinuous$ivn)
 #' estimate.dag(dat)
-#' }
 #'
 #' @export
 estimate.dag <- function(data,
@@ -133,12 +131,10 @@ estimate.dag <- function(data,
 #'
 #' @examples
 #'
-#' \dontrun{
 #' data(cytometryContinuous)
 #' dat <- sparsebnData(cytometryContinuous$data, type = "c", ivn = cytometryContinuous$ivn)
 #' estimate.covariance(dat) # estimate covariance
 #' estimate.precision(dat)  # estimate precision
-#' }
 #'
 #' @name estimate.covariance
 #' @rdname estimate.covariance
diff --git a/R/sparsebn-plotting.R b/R/sparsebn-plotting.R
index 3155c1b..d38104f 100644
--- a/R/sparsebn-plotting.R
+++ b/R/sparsebn-plotting.R
@@ -30,7 +30,7 @@
 #' @param ... Additional arguments to \code{\link{plot}}.
 #'
 #' @export
-plotDAG <- function(x){
+plotDAG <- function(x, ...){
     ### Must use igraph for the default method
     current_plot_pkg <- getPlotPackage()
     if(current_plot_pkg != "igraph"){
diff --git a/cran-comments.md b/cran-comments.md
index 97b6088..7fd8719 100644
--- a/cran-comments.md
+++ b/cran-comments.md
@@ -1,19 +1,16 @@
 ## Test environments
-* local OS X install, R 3.3.2
-* ubuntu 12.04.5 (travis-ci), R 3.3.2 (oldrel, devel, and release)
+* local OS X install, R 3.3.3
+* ubuntu 12.04.5 (travis-ci), R 3.3.3 (oldrel, devel, and release)
 * win-builder (devel and release)
+* r-hub (oldrel, devel, and release)
 
 ## R CMD check results
 There were no ERRORs, WARNINGs, or NOTEs.
 
-## CRAN notes
-
-The current warnings listed for v0.0.1 at https://cran.rstudio.com/web/checks/check_results_sparsebn.html are a result of recent updates to the dependencies for this submission. The current submission remedies all of these issues.
-
 ## Dependencies
 
 CHECK has been run on all dependencies and passed.
 
 ## Reverse dependencies
 
-There are no reverse dependencies.
\ No newline at end of file
+There are no reverse dependencies.
diff --git a/man/cytometryContinuous.Rd b/man/cytometryContinuous.Rd
index 8efc2ee..424497b 100644
--- a/man/cytometryContinuous.Rd
+++ b/man/cytometryContinuous.Rd
@@ -27,4 +27,3 @@ dat <- sparsebnData(cytometryContinuous$data, type = "c", ivn = cytometryContinu
 
 }
 \keyword{datasets}
-
diff --git a/man/cytometryDiscrete.Rd b/man/cytometryDiscrete.Rd
index 911b20c..09cc2ca 100644
--- a/man/cytometryDiscrete.Rd
+++ b/man/cytometryDiscrete.Rd
@@ -27,4 +27,3 @@ dat <- sparsebnData(cytometryDiscrete$data, type = "d", ivn = cytometryDiscrete$
 
 }
 \keyword{datasets}
-
diff --git a/man/estimate.covariance.Rd b/man/estimate.covariance.Rd
index 6e3baa4..5fd0707 100644
--- a/man/estimate.covariance.Rd
+++ b/man/estimate.covariance.Rd
@@ -2,6 +2,7 @@
 % Please edit documentation in R/sparsebn-main.R
 \name{estimate.covariance}
 \alias{estimate.covariance}
+\alias{estimate.covariance}
 \alias{estimate.precision}
 \title{Covariance estimation}
 \usage{
@@ -30,12 +31,9 @@ see Sections 2.1 and 2.2 (equation (6)) of Aragam and Zhou (2015) for more detai
 }
 \examples{
 
-\dontrun{
 data(cytometryContinuous)
 dat <- sparsebnData(cytometryContinuous$data, type = "c", ivn = cytometryContinuous$ivn)
 estimate.covariance(dat) # estimate covariance
 estimate.precision(dat)  # estimate precision
-}
 
 }
-
diff --git a/man/estimate.dag.Rd b/man/estimate.dag.Rd
index f232abb..9bc5d46 100644
--- a/man/estimate.dag.Rd
+++ b/man/estimate.dag.Rd
@@ -54,12 +54,9 @@ and \code{\link[discretecdAlgorithm]{cd.run}}.
 }
 \examples{
 
-\dontrun{
 # Estimate a DAG from the cytometry data
 data(cytometryContinuous)
 dat <- sparsebnData(cytometryContinuous$data, type = "c", ivn = cytometryContinuous$ivn)
 estimate.dag(dat)
-}
 
 }
-
diff --git a/man/pathfinder.Rd b/man/pathfinder.Rd
index da6be49..dcede12 100644
--- a/man/pathfinder.Rd
+++ b/man/pathfinder.Rd
@@ -42,4 +42,3 @@ pathfinder.data <- rmvnorm(n = 1000, sigma = as.matrix(covMat))
 
 }
 \keyword{datasets}
-
diff --git a/man/plotDAG.Rd b/man/plotDAG.Rd
index aef1cc1..f3d076f 100644
--- a/man/plotDAG.Rd
+++ b/man/plotDAG.Rd
@@ -4,7 +4,7 @@
 \alias{plotDAG}
 \title{Plot a DAG}
 \usage{
-plotDAG(x)
+plotDAG(x, ...)
 }
 \arguments{
 \item{x}{An \code{\link{edgeList}}, \code{\link{sparsebnFit}}, or \code{\link{sparsebnPath}} object.}
@@ -21,4 +21,3 @@ This method is not intended for customization. For more control over the output,
 \code{\link{setGraphPackage}} for even more control. These methods grants the user the full
 feature set of the selected package.
 }
-
diff --git a/man/sparsebn.Rd b/man/sparsebn.Rd
index 8ef774e..c3060d4 100644
--- a/man/sparsebn.Rd
+++ b/man/sparsebn.Rd
@@ -23,4 +23,3 @@ The workhorse behind \code{\link{sparsebn}} is the \code{\link[sparsebnUtils]{sp
 package, which provides various S3 classes and methods for representing and manipulating graphs.
 For more details on this package and the functionality it provides, see \code{?sparsebnUtils}.
 }
-