/
_pkgdown.yml
164 lines (148 loc) · 4.13 KB
/
_pkgdown.yml
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url: http://isoreader.isoverse.org
title: Isoreader
template:
params:
bootswatch: simplex
ganalytics: UA-106138361-3
development:
mode: auto
home:
strip_header: true
navbar:
title: isoreader
type: default
left:
- text: Quick Start
href: articles/quick_start.html
- text: Full Examples
menu:
- text: Dual Inlet
href: articles/dual_inlet.html
- text: Continuous Flow
href: articles/continuous_flow.html
- text: Scan
href: articles/scan.html
- text: Advanced
menu:
- text: Operations
href: articles/operations.html
- text: Development
href: articles/development.html
- text: Reference
href: reference/index.html
right:
- icon: fa-github fa-lg
href: https://github.com/isoverse/isoreader
reference:
- title: Reading IRMS data files
desc: >
These functions provide the core functionality for the package. They parse the raw isotope ratio mass spectrometry data files.
contents:
- iso_read_continuous_flow
- iso_read_dual_inlet
- iso_read_scan
- iso_reread_files
- title: Data wrangeling
desc: >
These functions provide tools to easily filter files and update file information.
The package also provides a few functions that expand on useful text processing provided by the readr package (summarized in `extract_data`).
contents:
- iso_add_file_info
- iso_rename_file_info
- iso_select_file_info
- iso_mutate_file_info
- iso_parse_file_info
- iso_set_file_root
- iso_filter_files
- extract_data
- extract_substring
- extract_word
- title: Data units
desc: >
These functions provide tools to work easily with numbers that have units associated with them.
contents:
- iso_double_with_units
- iso_is_double_with_units
- iso_get_units
- iso_strip_units
- iso_make_units_explicit
- iso_make_units_implicit
- iso_format
- title: Aggregating the data
desc: >
These functions aggregate the data collected from one or many IRMS data files.
contents:
- iso_get_data_summary
- iso_get_all_data
- iso_get_file_info
- iso_get_raw_data
- iso_get_bgrd_data
- iso_get_vendor_data_table
- iso_get_resistors
- iso_get_standards
- title: "Exporting/saving data: Feather, Excel, and R Data Storage"
desc: >
These functions provide tools to save the data to specific file formats.
contents:
- iso_save
- iso_export_files_to_excel
- iso_export_files_to_feather
- title: Package information and default parameters
desc: >
These functions provide information about the package capabilities, easy access to example files, and ways to set default parameters across the package.
contents:
- iso_get_supported_file_types
- iso_get_reader_example
- iso_caching
- iso_cleanup_reader_cache
- iso_info_messages
- iso_set_default_read_parameters
- iso_get_default_reader_parameters
- title: Dealing with read problems
desc: >
contents:
- iso_problem_functions
- iso_has_problems
- iso_get_problems_summary
- iso_get_problems
- iso_filter_files_with_problems
- title: File system functions
desc: >
Functions to find IRMS data files and root file paths.
contents:
- iso_expand_paths
- iso_root_paths
- iso_find_absolute_path_roots
- iso_shorten_relative_paths
- title: Low-level IO, debugging, and development tools
desc: >
See the advanced vignette for details.
contents:
- iso_read_files
- iso_register_dual_inlet_file_reader
- iso_register_continuous_flow_file_reader
- iso_register_scan_file_reader
- iso_is_file
- iso_is_file_list
- iso_is_continuous_flow
- iso_is_dual_inlet
- iso_is_scan
- iso_debug_mode
- iso_source_file_op_error
- iso_get_source_file_structure
- iso_print_source_file_structure
- read_iso_file
- reread_iso_files
- set_temp
- print.binary_isodat_file
- print.iso_file_list
- print.iso_file
- vec_arith.iso_double_with_units
- vec_cast.iso_double_with_units
- vec_ptype2.iso_double_with_units
- title: Deprecated
contents:
- deprecated
# additional modification notes on
# https://www.r-bloggers.com/building-a-website-with-pkgdown-a-short-guide/
# http://hadley.github.io/pkgdown/articles/pkgdown.html