InterMineR Workshop use-case, 2019

To run on Binder (no setup required):

To run locally, we assume you have:

For the Pax6 Workshop workflows:

• Jupyter Notebook installed
• an R kernel available
• the InterMineR R package installed.

For the Enrichment and Visualisations:

• all of the items in the previous list, PLUS
• See install.R for additional dependencies. You may wish to install them with BiocManager if you have a recent version of R (rather than BiocLite)

One these are all set up, clone this repo

https://github.com/intermine/interminer-workshop.git

Then move to the newly cloned directory, and run jupyter notebook:

cd interminer-workshop
jupyter notebook

Questions, queries, comments?

Feel free to open an issue or contact us