jGCaMP8 neuronal culture screening results and plots

The quickest way to reproduce the plots in the manuscript is using the Binder notebook link above

The notebooks here can be used to generate the plots from the jGCaMP8 article.

Instructions for reproducing the plots are below.

To activate the relevant Anaconda environment, execute conda activate jgcamp8-culture

Figure 1B

• Run interactive-multiparameter-screening-plot.ipynb
• Plot Half-rise time (1 AP) on x axis and dprime (1AP) on y axis

Figure 1D

• Run AP_plots.ipynb with the plot_subset_for_paper flag set to 1 to plot only the indicators in the figure; or set to 0 to plot all indicators (jGCaMP8f, jGCaMP8m, jGCaMP8s,jGCaMP8.712, GCaMP6s, GCaMP6f, jGCaMP7f, jGCaMP7s, jGCaMP7c, jGCaMP7b, XCaMP-Gf, XCaMP-G, XCaMP-Gf0)

Figure 1E

• Run grand-avg-hits-plotting.ipynb (1 AP data)

Supp. Fig. 2

• Run screening_rounds_summary.ipynb

Supp. Fig. 3

• Run grand-avg-hits-plotting.ipynb (3,10,160 AP data)

Supp. Fig. 7

• Run linearity-assessment.ipynb