From 93a909f5f8787110e0ff974f6d121f3ef7ac2c59 Mon Sep 17 00:00:00 2001 From: Patrik Smeds Date: Fri, 2 Jun 2023 15:40:21 +0200 Subject: [PATCH] fix: remove conda from template --- hydra_genetics/pipeline-template/workflow/rules/common.smk | 1 - 1 file changed, 1 deletion(-) diff --git a/hydra_genetics/pipeline-template/workflow/rules/common.smk b/hydra_genetics/pipeline-template/workflow/rules/common.smk index 383ec12f..954f68d3 100644 --- a/hydra_genetics/pipeline-template/workflow/rules/common.smk +++ b/hydra_genetics/pipeline-template/workflow/rules/common.smk @@ -124,7 +124,6 @@ def generate_copy_rules(output_spec): f'@workflow.output("{output_file}")', f'@workflow.log("logs/{rule_name}_{output_file.name}.log")', f'@workflow.container("{copy_container}")', - '@workflow.conda("../envs/copy_results_files.yaml")', f'@workflow.resources(time="{time}", threads={threads}, mem_mb="{mem_mb}", ' f'mem_per_cpu={mem_per_cpu}, partition="{partition}")', f'@workflow.shellcmd("{copy_container}")',