_sidebar.yml

website:
  sidebar:
  - contents:
    - _reference/index.qmd
    - contents: []
      section: Input file
    - contents: []
      section: Command Line Interface
    - contents:
      - _reference/cmd.qmd
      section: Python API
    - contents:
      - _reference/topology.topology.qmd
      - _reference/topology.ff.qmd
      - _reference/topology.utils.qmd
      - _reference/topology.atomic.qmd
      - _reference/parsing.TopologyDict.qmd
      section: Topology
    - contents:
      - _reference/analysis.qmd
      - _reference/cmd.qmd
      - _reference/config.qmd
      - _reference/constants.qmd
      - _reference/coordinates.qmd
      - _reference/kmc.qmd
      - _reference/parsing.qmd
      - _reference/plugins.qmd
      - _reference/recipe.qmd
      - _reference/runmanager.qmd
      - _reference/schema.qmd
      - _reference/tasks.qmd
      - _reference/tools.qmd
      - _reference/utils.qmd
      section: Modules
    - contents:
      - _reference/homolysis.reaction.Homolysis.qmd
      - _reference/hat_naive.reaction.NaiveHAT.qmd
      - _reference/dummyreaction.reaction.DummyReaction.qmd
      section: Reaction Plugins
    id: _reference
  - id: dummy-sidebar