template.ipynb

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    "#@title Initialize environment\n",
    "\n",
    "#@markdown We recommend setting up a working directory on your google drive. This is a \n",
    "#@markdown convenient way to pass files in and out of this analysis. It will \n",
    "#@markdown also allow you to save your work. If you put `biophysics` into the form\n",
    "#@markdown field below, the analyis will save all of its calculations in the \n",
    "#@markdown `biophysics` directory in MyDrive (i.e. the top directory at\n",
    "#@markdown https://drive.google.com). This script will create the directory if \n",
    "#@markdown it does not already exist. If the directory already exists, any files\n",
    "#@markdown that are already in that directory will be available for the analysis. \n",
    "#@markdown You could, for example, put a file called `data.csv` in `biophysics` and then\n",
    "#@markdown access it as \"data.csv\" in all cells below.\n",
    "#@markdown <br/>\n",
    "#@markdown Note: Google may prompt you for permission to access the drive. \n",
    "#@markdown To work in a temporary colab environment, leave this blank. Your results\n",
    "#@markdown will disappear when you close the directory. \n",
    "\n",
    "try:\n",
    "    import google.colab\n",
    "    RUNNING_IN_COLAB = True\n",
    "except ImportError:\n",
    "    RUNNING_IN_COLAB = False\n",
    "except Exception as e: \n",
    "    err = \"Could not figure out if runnning in a colab notebook\\n\"\n",
    "    raise Exception(err) from e\n",
    "\n",
    "# ------------------------------------------------------------------------------\n",
    "# Imports\n",
    "\n",
    "if RUNNING_IN_COLAB:\n",
    "    %pip install -q ipywidgets\n",
    "\n",
    "%matplotlib inline\n",
    "from matplotlib import pyplot as plt\n",
    "import numpy as np\n",
    "import pandas as pd\n",
    "import scipy\n",
    "\n",
    "from ipywidgets import interact, interactive, fixed, interact_manual\n",
    "import ipywidgets as widgets\n",
    "from IPython.display import display\n",
    "\n",
    "import os\n",
    "\n",
    "# ------------------------------------------------------------------------------\n",
    "# Environment\n",
    "\n",
    "if RUNNING_IN_COLAB:\n",
    "    \n",
    "    working_dir = \"/content/\"\n",
    "\n",
    "    # Select a working directory on google drive\n",
    "    google_drive_directory = \"loving_it\" #@param {type:\"string\"}\n",
    "    google_drive_directory = google_drive_directory.strip()\n",
    "\n",
    "    # Set up google drive\n",
    "    if google_drive_directory != \"\":\n",
    "\n",
    "        from google.colab import drive\n",
    "        drive.mount('/content/gdrive/')\n",
    "\n",
    "        working_dir = f\"/content/gdrive/MyDrive/{google_drive_directory}\"\n",
    "        os.system(f\"mkdir -p {working_dir}\")\n",
    "\n",
    "    os.chdir(working_dir)\n",
    "    print(f\"Working directory: {os.getcwd()}/\")\n",
    "\n",
    "    print(\"\\nCurrent directory contents:\")\n",
    "    print(os.getcwd())\n",
    "    for f in os.listdir(\".\"):\n",
    "        print(f\"    {f}\")\n",
    "    print()\n",
    "    \n",
    "\n",
    "# ------------------------------------------------------------------------------\n",
    "# Default graph label sizing\n",
    "\n",
    "SMALL_SIZE = 14\n",
    "MEDIUM_SIZE = 16\n",
    "BIGGER_SIZE = 18\n",
    "\n",
    "plt.rc('font', size=SMALL_SIZE)          # controls default text sizes\n",
    "plt.rc('axes', titlesize=SMALL_SIZE)     # fontsize of the axes title\n",
    "plt.rc('axes', labelsize=MEDIUM_SIZE)    # fontsize of the x and y labels\n",
    "plt.rc('xtick', labelsize=SMALL_SIZE)    # fontsize of the tick labels\n",
    "plt.rc('ytick', labelsize=SMALL_SIZE)    # fontsize of the tick labels\n",
    "plt.rc('legend', fontsize=SMALL_SIZE)    # legend fontsize\n",
    "plt.rc('figure', titlesize=BIGGER_SIZE)  # fontsize of the figure title"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "2288e941-6cc5-4187-bcbe-194d1e90ded0",
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   "source": []
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