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Is your feature request related to a problem? Please describe. Hi.
I'm trying to calculate potential of mean force (PMF) by integrating mean force.
I used --grad for the calculation of potential energy gradient, and integrated it to get PMF curve.
But I'm not sure this is the right way since the calculation result is different from the reference.
Is this reasonable way to calculate the PMF or Is there any method that I can use for the calculation?
I want to calculate to force applied to the specific atom.
The text was updated successfully, but these errors were encountered:
**Is your feature request related to a problem? Please describe. ** Hi. I'm trying to calculate potential of mean force (PMF) by integrating mean force. I used --grad for the calculation of potential energy gradient, and integrated it to get PMF curve. But I'm not sure this is the right way since the calculation result is different from the reference. Is this reasonable way to calculate the PMF or Is there any method that I can use for the calculation? I want to calculate to force applied to the specific atom.
**Is your feature request related to a problem? Please describe. ** Hi.
I found that the gradient can be referred as force according to #46, however, I'm not sure that the gradient is F or -F.
What is the sign of the gradient?
Sorry, something went wrong.
@OkKakao the forces are calculated as:
$\vec{F} = -\nabla U(x,y,z)$
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Is your feature request related to a problem? Please describe.
Hi.
I'm trying to calculate potential of mean force (PMF) by integrating mean force.
I used --grad for the calculation of potential energy gradient, and integrated it to get PMF curve.
But I'm not sure this is the right way since the calculation result is different from the reference.
Is this reasonable way to calculate the PMF or Is there any method that I can use for the calculation?
I want to calculate to force applied to the specific atom.
The text was updated successfully, but these errors were encountered: