/
data_dictionary.yml
180 lines (145 loc) · 5.05 KB
/
data_dictionary.yml
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dictionary_last_modified: 2022-06-29
fields:
- name: ID
type: string
description: >
Unique ID of the case. ID starts with N for non-endemic list
and E for endemic list.
required: true
- name: Status
type: confirmed | suspected | discarded | omit_error
description: >
Status of a case. Cases which are discarded were previously
suspected but have now been confirmed negative, and should
be excluded from case counts. Cases which are omit_error were
incorrectly added and should be dismissed from any data
interpretation.
required: true
- name: Location
type: string
description: Country subdivision where case was reported
examples: [Islington, Croydon]
- name: City
type: string
description: City where case was reported
examples: [London, Madrid, Sydney, Boston]
- name: Country
type: string
description: Country where case was reported
required: true
examples: [England, United States, Spain, Australia]
- name: Country_ISO3
type: string
description: ISO 3166-1 alpha-3, three letter country codes
required: true
examples: [ITA, GBR, ESP, BOL]
- name: Age
type: integer-range
description: Age of the individual, specified as a range,
either open-ended (<n, >n) or as a range delimited by a hyphen (m-n)
- name: Gender
type: male | female | other
description: Gender of the individual
- name: Date_onset
type: iso8601date
description: Date of onset of symptoms
- name: Date_confirmation
type: iso8601date
description: Date when case was confirmed
- name: Symptoms
type: string
description: Comma separated list of symptoms
examples:
- rash
- vesicular rash
- skin lesions
- ulcerative lesions
- oral and genital ulcers
- fever
- name: Hospitalised (Y/N/NA)
type: Y | N | NA
description: Whether individual was hospitalised (Y=Yes, N=No, NA=Not applicable)
- name: Date_hospitalisation
type: iso8601date
description: Date individual was hospitalised
- name: Isolated (Y/N/NA)
type: Y | N | NA
description: Whether individual was isolated (Y=Yes, N=No, NA=Not applicable)
- name: Date_isolation
type: iso8601date
description: Date individual entered isolation
- name: Outcome
type: recovered | death
description: Optional field that specifies outcome of the disease
- name: Contact_comment
type: string
description: Free text describing how individual came into contact
examples:
- Under investigation
- Index case
- Flight
- name: Contact_ID
type: integer
description: If specified, is the case ID from which this patient contracted the virus
- name: Contact_location
type: string
description: Location where contact happened that led to transmission
examples: [Household]
- name: Travel_history (Y/N/NA)
type: Y | N | NA
description: Whether individual has travel history (Y=Yes, N=No, NA=Not applicable)
- name: Travel_history_entry
type: string
description: Date when individual entered the country
- name: Travel_history_start
type: string
description: Free text describing when travel started
- name: Travel_history_location
type: string
description: Location where individual had travelled
- name: Travel_history_country
type: string
description: Country where individual had travelled
- name: Genomics_Metadata
type: string
description: Which clade the viral strain belongs to
examples:
- West African Clade
- North African Clade
- name: Confirmation_method
type: string
description: Test used to confirm diagnosis
examples: ["RT-PCR"]
- name: Source
type: url
description: URL of news story or government source where this case was confirmed
required: true
- name: Source_II
type: url
description: URL of news story or government source where this case was confirmed (archived or secondary source)
- name: Source_III
type: url
description: URL of news story or government source where this case was confirmed (archived or secondary source)
- name: Source_IV
type: url
description: URL of news story or government source where this case was confirmed (archived or secondary source)
- name: Source_V
type: url
description: URL of news story or government source where this case was confirmed (archived or secondary source)
- name: Source_VI
type: url
description: URL of news story or government source where this case was confirmed (archived or secondary source)
- name: Source_VII
type: url
description: URL of news story or government source where this case was confirmed (archived or secondary source)
- name: Date_entry
type: iso8601date
description: Date case was entered into line list
required: true
- name: Date_death
type: iso8601date
description: Date of death
- name: Date_last_modified
type: iso8601date
description: Last date when case was modified in line list
required: true