{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":531891154,"defaultBranch":"main","name":"isaric","ownerLogin":"globaldothealth","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-09-02T11:05:20.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/63239254?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1707134689.0","currentOid":""},"activityList":{"items":[{"before":"50a36223820c6ae09dce0af87c256efeadbc0155","after":"4587b181ca6fea4e60f13cfb7e07748fa9b7d2f4","ref":"refs/heads/main","pushedAt":"2024-02-07T18:55:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhidg","name":"Abhishek Dasgupta","path":"/abhidg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62665?s=80&v=4"},"commit":{"message":"Change project status to unmaintained","shortMessageHtmlLink":"Change project status to unmaintained"}},{"before":"bcd5543dab64707dcb93dd154774f33605a40c59","after":"50a36223820c6ae09dce0af87c256efeadbc0155","ref":"refs/heads/main","pushedAt":"2024-02-07T18:51:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abhidg","name":"Abhishek Dasgupta","path":"/abhidg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62665?s=80&v=4"},"commit":{"message":"Delete fhir directory\n\nRemoving FHIR related information, this will go in gh/isaric-pipeline","shortMessageHtmlLink":"Delete fhir directory"}},{"before":"5beb76975de3f464b7a3265be143f094a1d262d6","after":"0f51307d48dc67d04d459a868165c817bfa8c0a5","ref":"refs/heads/fhir-schema-patient","pushedAt":"2024-02-05T12:08:16.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"abhidg","name":"Abhishek Dasgupta","path":"/abhidg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62665?s=80&v=4"},"commit":{"message":"fhirflat: add Patient","shortMessageHtmlLink":"fhirflat: add Patient"}},{"before":"2cd2b712327fcb8d06f7b785290b44ddf3c2802f","after":"5beb76975de3f464b7a3265be143f094a1d262d6","ref":"refs/heads/fhir-schema-patient","pushedAt":"2024-02-05T12:05:22.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"abhidg","name":"Abhishek Dasgupta","path":"/abhidg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62665?s=80&v=4"},"commit":{"message":"fhirflat: add Patient","shortMessageHtmlLink":"fhirflat: add Patient"}},{"before":null,"after":"2cd2b712327fcb8d06f7b785290b44ddf3c2802f","ref":"refs/heads/fhir-schema-patient","pushedAt":"2024-02-05T12:04:49.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"abhidg","name":"Abhishek Dasgupta","path":"/abhidg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/62665?s=80&v=4"},"commit":{"message":"fhirflat: add Patient","shortMessageHtmlLink":"fhirflat: add Patient"}},{"before":"074adaaab3a73a8e0e419e829659d63feda7764a","after":"e5a3ade431782cd5f5bc704e5fe4094012f854f4","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-02-02T16:19:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Create specimen.json","shortMessageHtmlLink":"Create specimen.json"}},{"before":"8e7fb007651fe7cb2906561346f8eb78647b911b","after":"074adaaab3a73a8e0e419e829659d63feda7764a","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-01-29T17:10:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Initial draft for converting FHIR resources to FHIRflat files","shortMessageHtmlLink":"Initial draft for converting FHIR resources to FHIRflat files"}},{"before":"399ab2cc0058adc3e85008b45ee2b8997b7c49bb","after":"a9ac6acdb749dfcc7fdfc28198e2e5ab920efb63","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2024-01-24T14:03:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sadiekelly","name":null,"path":"/sadiekelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/114925392?s=80&v=4"},"commit":{"message":"SDTM RP FHIR","shortMessageHtmlLink":"SDTM RP FHIR"}},{"before":"54a09124b9da2eab725fb92bf4083cd38ce1841b","after":"399ab2cc0058adc3e85008b45ee2b8997b7c49bb","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2024-01-24T14:02:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sadiekelly","name":null,"path":"/sadiekelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/114925392?s=80&v=4"},"commit":{"message":"SDTM PO FHIR","shortMessageHtmlLink":"SDTM PO FHIR"}},{"before":"41b760fcbf474e6ca5719aaf9fd3f56b6b93c3c6","after":"54a09124b9da2eab725fb92bf4083cd38ce1841b","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2024-01-24T13:22:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Delete empty vital signs file","shortMessageHtmlLink":"Delete empty vital signs file"}},{"before":"a022f8912d1ae034f8ab5801a682fa000c283224","after":"41b760fcbf474e6ca5719aaf9fd3f56b6b93c3c6","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2024-01-24T13:13:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Update SA_complications_SS_codes.csv","shortMessageHtmlLink":"Update SA_complications_SS_codes.csv"}},{"before":"5cb922ac9642ddc5a72bcc3c4b5822cd2eb19bce","after":"a022f8912d1ae034f8ab5801a682fa000c283224","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2024-01-24T11:39:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Update RP_PO_mappings.csv","shortMessageHtmlLink":"Update RP_PO_mappings.csv"}},{"before":"fc38034b1e692640e8ce26ab8cc081cddd31fa04","after":"8e7fb007651fe7cb2906561346f8eb78647b911b","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-01-24T11:31:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Fix indentation","shortMessageHtmlLink":"Fix indentation"}},{"before":"2366bf7a1e3544ef984f804f3959c1f6538e8f8b","after":"fc38034b1e692640e8ce26ab8cc081cddd31fa04","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-01-24T11:01:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Add organization","shortMessageHtmlLink":"Add organization"}},{"before":"72be26e4a3400292a7b39bcc46100e30e0a61a0f","after":"5cb922ac9642ddc5a72bcc3c4b5822cd2eb19bce","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2024-01-20T20:02:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekamau","name":"Everlyn Kamau","path":"/ekamau","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7207204?s=80&v=4"},"commit":{"message":"LB domain LBSPEC snomed mappings\n\nLB domain LBSPEC snomed mappings","shortMessageHtmlLink":"LB domain LBSPEC snomed mappings"}},{"before":"47680badffd161fbc8f2d7ae8bd02cb13ae8e2f3","after":"72be26e4a3400292a7b39bcc46100e30e0a61a0f","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2024-01-20T19:21:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ekamau","name":"Everlyn Kamau","path":"/ekamau","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7207204?s=80&v=4"},"commit":{"message":"LB domain LBTEST variable snomed mappings\n\nLB domain LBTEST variable snomed mappings","shortMessageHtmlLink":"LB domain LBTEST variable snomed mappings"}},{"before":"8c3d8c8d8fada34fe9281edbde901248b060f139","after":"2366bf7a1e3544ef984f804f3959c1f6538e8f8b","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-01-17T17:18:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Edits to observation, rStudy, encounter","shortMessageHtmlLink":"Edits to observation, rStudy, encounter"}},{"before":"bdfbf4e915dc127c54710a45d62412199e2783d5","after":"8c3d8c8d8fada34fe9281edbde901248b060f139","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-01-10T16:13:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Previous export file for isaric schema -> fhir","shortMessageHtmlLink":"Previous export file for isaric schema -> fhir"}},{"before":"0cd9e4d8b25bf79f7baa6a372345355de695cc54","after":"bdfbf4e915dc127c54710a45d62412199e2783d5","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-01-10T16:09:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"1st draft ResearchStudy resource","shortMessageHtmlLink":"1st draft ResearchStudy resource"}},{"before":"cde29a94ab544d03e5b8f84ecb0bb5997b1be132","after":"0cd9e4d8b25bf79f7baa6a372345355de695cc54","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-01-08T18:06:46.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Add draft ResearchSubject","shortMessageHtmlLink":"Add draft ResearchSubject"}},{"before":"b472a3715afdf0eeb6fc97c0a83852b003f49674","after":"cde29a94ab544d03e5b8f84ecb0bb5997b1be132","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-01-08T16:58:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Add Encounter example","shortMessageHtmlLink":"Add Encounter example"}},{"before":"80e49b7dc8c7a803138766dcffa6cc60d8806cbd","after":"b472a3715afdf0eeb6fc97c0a83852b003f49674","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-01-05T12:00:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Add possible timing extension for observations","shortMessageHtmlLink":"Add possible timing extension for observations"}},{"before":"b72a163853953c4fc6340a0dc2f2339fa7aed42f","after":"80e49b7dc8c7a803138766dcffa6cc60d8806cbd","ref":"refs/heads/fhir-resource-structures","pushedAt":"2024-01-05T11:48:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"Add outcome observation example","shortMessageHtmlLink":"Add outcome observation example"}},{"before":"938b2fe7397ba28d2be2fcc0428383f3cbd58409","after":"47680badffd161fbc8f2d7ae8bd02cb13ae8e2f3","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2024-01-02T14:30:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sadiekelly","name":null,"path":"/sadiekelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/114925392?s=80&v=4"},"commit":{"message":"SDTM MB domain to FHIR mapping\n\nInitial thoughts, mapping not completed. IPS = International Patient Summary and forms an ISO standard for data sharing. Pathogen testing is included as a resource in the IPS specification so I think it would be good to ensure we align with this where possible. Commented in the mapping sheet where IPS-aligned terminology is used","shortMessageHtmlLink":"SDTM MB domain to FHIR mapping"}},{"before":"94b5ebbc8cd08b044a2312138ebcfd9a63926209","after":"b72a163853953c4fc6340a0dc2f2339fa7aed42f","ref":"refs/heads/fhir-resource-structures","pushedAt":"2023-12-13T16:01:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"observation examples","shortMessageHtmlLink":"observation examples"}},{"before":"09277c604a99715fa500da29226d4e50153624cd","after":"94b5ebbc8cd08b044a2312138ebcfd9a63926209","ref":"refs/heads/fhir-resource-structures","pushedAt":"2023-12-13T15:33:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pipliggins","name":"Pip Liggins","path":"/pipliggins","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/55396775?s=80&v=4"},"commit":{"message":"first draft example condition, meds","shortMessageHtmlLink":"first draft example condition, meds"}},{"before":"3ce16d4c79fbd372d3b93d98925034803b85d68e","after":"938b2fe7397ba28d2be2fcc0428383f3cbd58409","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2023-12-13T15:24:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sadiekelly","name":null,"path":"/sadiekelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/114925392?s=80&v=4"},"commit":{"message":"Initial mapping SDTM SC to FHIR","shortMessageHtmlLink":"Initial mapping SDTM SC to FHIR"}},{"before":"c419d3ce7dfdf0d47fdc3b189dfd4fecc6e64d95","after":"3ce16d4c79fbd372d3b93d98925034803b85d68e","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2023-12-13T14:20:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sadiekelly","name":null,"path":"/sadiekelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/114925392?s=80&v=4"},"commit":{"message":"Initial mapping of SDTM HO (Healthcare encounters) to FHIR\n\nStill plenty of gaps but here's some initial mapping and coding from HO. Some issues here that we will very likely encounter in other domains;\r\n - How to make events unique when there are no dates. We used other timing variables in SDTM including VISIT/VISITNUM and CDSTDY (contributor-defined study day), not sure how we can represent something similar as yet\r\n- Representation of different timing interval text in EVINTX\r\n- Classifying events as 'previous' or from follow up, particularly when we have no dates (previous admissions have no dates at all so will just appear as an admission due to covid-19). Capture of data relating to hospitalisation during follow up also has no dates","shortMessageHtmlLink":"Initial mapping of SDTM HO (Healthcare encounters) to FHIR"}},{"before":"04892ef85363cd43acc1f18dc58df46530dde9ab","after":"c419d3ce7dfdf0d47fdc3b189dfd4fecc6e64d95","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2023-12-13T12:48:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sadiekelly","name":null,"path":"/sadiekelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/114925392?s=80&v=4"},"commit":{"message":"Update VS_mappings.csv\n\nAdditional potential codes added for Estimated Weight","shortMessageHtmlLink":"Update VS_mappings.csv"}},{"before":"9fdeab1ec5b6f04fefd151108342059917b9ea42","after":"04892ef85363cd43acc1f18dc58df46530dde9ab","ref":"refs/heads/sdtm-snomed-mapping","pushedAt":"2023-12-13T12:39:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sadiekelly","name":null,"path":"/sadiekelly","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/114925392?s=80&v=4"},"commit":{"message":"Update RP_PO_mappings.csv\n\nAdditional codes added that were used in GECCO mapping for these questions. Pregnancy status loinc code is also used in the International Patient Summary (a core set of elements for data sharing which would be good to comply with where possible).","shortMessageHtmlLink":"Update RP_PO_mappings.csv"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD9MduHQA","startCursor":null,"endCursor":null}},"title":"Activity · globaldothealth/isaric"}