New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
request Noctua reasoner QC report #873
Comments
Command I use to run:
This will create four report files in the
|
@pgaudet I've bolted a test of this onto the snapshot runs. On the next successful snapshot, a |
…o extended store; for geneontology/noctua#873
@pgaudet Okay, the GO-CAM "QC" (ShEx reports) takes two days and seven hours to run, so we're going to have to figure something else out. I think that there are likely significant gains in the code to be had. That said, I've got a copy of the reports here, so that's something to show for now: Otherwise, I'm putting this on hold for the moment and moving ahead with other pipeline additions. |
During the testing of the MGI import to GOC project, I noticed one of our gene-centric models (Cntn2) failed to be exported into MGI from Noctua. Further looking into the model shown: the model was modified in graph on on 7/21/2023 and after the modification, it didn’t pass reasoner.
MGI has fixed the model in Noctua on 4/3/2024, it’s all good now.
This ticket is to request a Noctua reasoner QC report:
If there are ShEx errors, then an entire gene-centric page may fail to be exported, it would be nice that GOC has a report to show a list of all the production noctua models that do not pass the reasoner, so MODs curators will be notified to correct them.
After talking with @pgaudet, we decide to submit the request here.
Thanks,
Li
The text was updated successfully, but these errors were encountered: