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Review annotations to GO:0019008 molybdopterin synthase complex #5216

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raymond91125 opened this issue May 3, 2024 · 8 comments
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annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms

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@raymond91125
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raymond91125 commented May 3, 2024

Dear all,

The proposal has been made to obsolete GO:0019008 molybdopterin synthase complex (replaced by GO:1990140).
see geneontology/go-ontology#27655

Experimental annotations that need to be reviewed are here:
https://docs.google.com/spreadsheets/d/1huQfgPF9LyE-IsRUnITuhYJsu2Mn5S4DyLcfFIjPpA8/edit#gid=0

Impacted groups:
ComplexPortal 1
FlyBase 3
UniProt 1


Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)

UniRule:UR000160817 > GO:molybdopterin synthase complex ; GO:0019008
UniRule:UR000161417 > GO:molybdopterin synthase complex ; GO:0019008
HAMAP:MF_03051 > GO:molybdopterin synthase complex ; GO:0019008
HAMAP:MF_03052 > GO:molybdopterin synthase complex ; GO:0019008
InterPro:IPR010505 Molybdenum cofactor biosynthesis protein A-like, twitch domain > GO:molybdopterin synthase complex ; GO:0019008
InterPro:IPR028888 Molybdopterin synthase catalytic subunit, eukaryotes > GO:molybdopterin synthase complex ; GO:0019008

Thanks.

@sjm41
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sjm41 commented May 4, 2024

Thanks @raymond91125
Won't these annotations get automatically transferred given it's effectively a merge (obsoletion and replace by)?

@pgaudet
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pgaudet commented May 6, 2024

@sjm41

ComplexPortal, InterPro and UniRule need to be manually updated.

@raymond91125
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Is there a table showing what annotation types would be automatically replaced, thus not need assignment?

@sjm41
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sjm41 commented May 7, 2024

The FlyBase annotation will get automatically updated, right?

@pgaudet
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pgaudet commented May 7, 2024

@sjm41

Yes

@sandraorchard
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Complex Portal done

@sandraorchard sandraorchard removed their assignment May 9, 2024
@PedroRaposo
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@pedruzzi, could the GO term GO:0019008 (molybdopterin synthase complex) be changed accordingly on rules UR000160817 and UR000161417, since these are HAMAP rules, please?

@pedruzzi
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HAMAP rules fixed

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Labels
annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms
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