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DESCRIPTION
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DESCRIPTION
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Package: diversitree
Title: diversitree: comparative phylogenetic analyses of diversification
Version: 0.9-7
Date: 2014-02-20
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with GeoSSE and
ClaSSE by Emma E. Goldberg <eeg@uic.edu>, and BiSSE-ness by Karen
Magnuson-Ford.
Maintainer: Richard G. FitzJohn <rich.fitzjohn@gmail.com>
Depends: R (>= 2.10), deSolve (>= 1.7), ape, subplex, methods, Rcpp (>= 0.10.0)
Suggests: numDeriv, minqa, lubridate, expm, caper, geiger
LinkingTo: Rcpp
RcppModules: diversitree
SystemRequirements: fftw3 (>= 3.1.2), gsl (>= 1.15)
Description: Contains a number of comparative phylogenetic methods,
mostly focusing on analysing diversification and character
evolution. Contains implementations of BiSSE (Binary State
Speciation and Extinction; Maddison et al. 2007: Syst. Biol. 56:
701) and its unresolved tree extensions (FitzJohn et al. 2009:
Syst. Biol. 58: 595), MuSSE (Multiple State Speciation and
Extinction), QuaSSE (Quantitative State Speciation and Extinction;
FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE (Geographic State
Speciation and Extinction; Goldberg et al. 2011: Syst. Biol. 60:
451), and BiSSE-ness (Magnuson-Ford and Otto 2012: Am. Nat.)
Other included methods include Markov models of discrete and
continuous trait evolution and constant rate speciation and
extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree