New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

planemo test ignoring `--test_timeout`? #1331

Open

bernt-matthias opened this issue Nov 28, 2022 · 0 comments

Contributor

bernt-matthias commented Nov 28, 2022

Not sure if planemo test considers --test_timeout

The following are the longest test times for a recent IUC job where we have a test timeout of 900:

5381.463400363922, breseq, 0
4196.358647584915, mothur_align_seqs, 3
2054.1960706710815, data_manager_metaphlan_download, 0
762.1416461467743, pyega3, 4
724.9553120136261, repeatmodeler, 0
679.3012344837189, trinotate, 0
657.493992805481, orthofinder_onlygroups, 8
650.9388360977173, trinotate, 1
642.6715126037598, mitos2, 0
597.879430770874, busco, 6

might also be due to:

galaxyproject/galaxy#14667

Was thinking to add this to the CI / PR statistics output. This was the used command:

jq '.["tests"][]["data"] | "\(.time_seconds), \(.tool_id), \(.test_index)"' tool_test_output.json | sed 's/"//g' | sort -t ',' -n -r | head

The text was updated successfully, but these errors were encountered:

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment