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merge error #198

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Qijie0615 opened this issue Aug 28, 2023 · 0 comments
Open

merge error #198

Qijie0615 opened this issue Aug 28, 2023 · 0 comments

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@Qijie0615
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These two variations were found in four samples, and when I only used this four-sample vcf to merge, these two variations could be merged into one correctly. However, when I merged with a population (vcf with 4000 samples), these two mutations could not be merged into one.
SURVIVOR merge DEL_FileList.list 1000 1 1 1 0 0 repeat.DEL.vcf
Looking forward to your reply!

chr8 84700770 DEL_3417 N 591 PASS SUPP=1;SVLEN=-36499;SVTYPE=DEL;SVMETHOD=SURVIVOR1.0.7;CHR2=chr8;END=84737242;CIPOS=0,0;CIEND=0,0;STRANDS=+-
chr8 84700556 DEL_3914 N 999 PASS SUPP=3;SVLEN=-36602;SVTYPE=DEL;SVMETHOD=SURVIVOR1.0.7;CHR2=chr8;END=84737218;CIPOS=0,281;CIEND=0,0;STRANDS=+-
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