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DESCRIPTION
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DESCRIPTION
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Package: gep2pep
Type: Package
Title: Creation and Analysis of Pathway Expression Profiles (PEPs)
Version: 1.3.1
Date: 2019-03-30
Author: Francesco Napolitano <franapoli@gmail.com>
Maintainer: Francesco Napolitano <franapoli@gmail.com>
Description: Pathway Expression Profiles (PEPs) are based on the
expression of pathways (defined as sets of genes) as opposed to
individual genes. This package converts gene expression profiles
to PEPs and performs enrichment analysis of both pathways and
experimental conditions, such as "drug set enrichment analysis"
and "gene2drug" drug discovery analysis respectively.
License: GPL-3
Imports:
repo (>= 2.1.1),
foreach,
stats,
utils,
GSEABase,
methods,
Biobase,
XML,
rhdf5,
digest,
iterators
Suggests:
WriteXLS,
testthat,
knitr,
rmarkdown
RoxygenNote: 6.1.0
VignetteBuilder: knitr
biocViews: GeneExpression,
DifferentialExpression,
GeneSetEnrichment,
DimensionReduction,
Pathways,
GO
Encoding: UTF-8